Variant report

Variant rs3820417
Chromosome Location chr1:193001209-193001210
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:192963800-193012400 Weak transcription NHEK skin
2 chr1:192963800-193019600 Weak transcription Ovary ovary
3 chr1:192968000-193009400 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr1:192968000-193012400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:192968000-193019400 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr1:192977600-193005200 Weak transcription A549 lung
7 chr1:192979200-193025600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:192981400-193026200 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr1:192982600-193002400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:192983000-193017800 Weak transcription HSMMtube muscle
11 chr1:192983200-193012800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:192983200-193018000 Weak transcription Pancreas Pancrea
13 chr1:192983200-193023600 Weak transcription Psoas Muscle Psoas
14 chr1:192983200-193027800 Weak transcription Aorta Aorta
15 chr1:192984200-193026600 Weak transcription NHLF lung
16 chr1:192984400-193026400 Weak transcription HUVEC blood vessel
17 chr1:192984800-193025800 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr1:192986200-193012000 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:192987000-193009200 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr1:192987400-193026200 Weak transcription Fetal Kidney kidney
21 chr1:192988600-193008400 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:192988800-193006000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:192988800-193012600 Weak transcription Colon Smooth Muscle Colon
24 chr1:192989800-193012600 Weak transcription Spleen Spleen
25 chr1:192990800-193012800 Weak transcription Fetal Brain Female brain
26 chr1:192991200-193014400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:192991400-193012600 Weak transcription Stomach Smooth Muscle stomach
28 chr1:192991400-193018000 Weak transcription H1 Cell Line embryonic stem cell
29 chr1:192991600-193009600 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:192991600-193018000 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:192991600-193018000 Weak transcription Colonic Mucosa Colon
32 chr1:192991800-193012600 Weak transcription Thymus Thymus
33 chr1:192991800-193015400 Weak transcription Duodenum Mucosa Duodenum
34 chr1:192992200-193004600 Weak transcription Liver Liver
35 chr1:192992800-193012600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:192993200-193014400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr1:192993400-193017800 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:192994800-193012400 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:192994800-193012600 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:192994800-193018000 Weak transcription Lung lung
41 chr1:192995200-193011400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:192995200-193011600 Weak transcription Fetal Muscle Leg muscle
43 chr1:192995200-193012800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:192995600-193012400 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:192995800-193012600 Weak transcription Primary T cells from cord blood blood
46 chr1:192996000-193008800 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:192996000-193012600 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:192996000-193018400 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr1:192996200-193011400 Weak transcription Placenta Placenta
50 chr1:192996200-193012600 Weak transcription HUES48 Cell Line embryonic stem cell

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