Variant report

Variant	rs10732293
Chromosome Location	chr1:193185777-193185778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193159041..193161726-chr1:193183249..193186234,2	K562	blood:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10399607	0.92[ASN][1000 genomes]
rs10399929	0.92[ASN][1000 genomes]
rs10494674	0.91[CHB][hapmap];0.96[JPT][hapmap]
rs10733078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10737620	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10737621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10737622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10737623	0.94[ASN][1000 genomes]
rs10754044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10754048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10754049	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10754052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10754053	0.90[ASN][1000 genomes]
rs10754054	0.95[ASN][1000 genomes]
rs10754055	0.94[ASN][1000 genomes]
rs10801173	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10801174	1.00[CEU][hapmap]
rs10801177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10801178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10801179	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10801183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10801184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10801187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10801188	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10801189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801190	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10801191	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10801192	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10921308	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10921312	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10921318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10921319	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10921323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10921325	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10921326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921328	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921330	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921334	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921336	0.97[ASN][1000 genomes]
rs11577299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs12047390	0.82[CHB][hapmap]
rs12064521	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078145	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12086884	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12090626	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12124282	0.83[EUR][1000 genomes]
rs12126529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12137318	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12141392	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12145057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs12410213	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325197	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1361404	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs1361405	0.82[CHB][hapmap]
rs1408830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1416977	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1536097	0.89[ASN][1000 genomes]
rs1536098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539724	0.91[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs1578242	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1578243	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1632444	0.94[ASN][1000 genomes]
rs1749424	0.93[ASN][1000 genomes]
rs1770000	0.81[EUR][1000 genomes]
rs1890660	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2078083	0.99[ASN][1000 genomes]
rs2181408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2186016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2251699	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2254646	0.93[ASN][1000 genomes]
rs2275444	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2370028	0.80[EUR][1000 genomes]
rs2370029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2370079	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2486842	0.92[ASN][1000 genomes]
rs2486843	0.82[EUR][1000 genomes]
rs3738244	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3806351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs3818865	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3820417	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3945872	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4379660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4450000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4466634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4657744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4657747	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4657842	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4657843	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4657847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4657848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs474328	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs475163	0.97[ASN][1000 genomes]
rs503265	0.93[ASN][1000 genomes]
rs524701	0.97[ASN][1000 genomes]
rs531327	0.83[EUR][1000 genomes]
rs543788	0.94[ASN][1000 genomes]
rs569656	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs571029	0.94[ASN][1000 genomes]
rs6428152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs6428153	0.90[ASN][1000 genomes]
rs6428154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6428155	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6428156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6428157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6428159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6428160	0.97[ASN][1000 genomes]
rs6661522	0.81[CHB][hapmap]
rs6663162	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6665069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6665666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6671237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6671476	0.94[ASN][1000 genomes]
rs6673271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6675827	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6676322	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6676416	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6676878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6680224	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs6689006	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6692342	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6697079	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs693519	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs7514072	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7515024	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7518792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs7519242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7542466	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7545223	0.92[ASN][1000 genomes]
rs7546869	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7547615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7553247	0.81[YRI][hapmap]
rs7554925	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs817136	0.97[ASN][1000 genomes]
rs817140	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs843844	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs912070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs912071	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs942680	0.97[ASN][1000 genomes]
rs9427838	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9783104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9887974	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193155800-193243400	Weak transcription	Pancreas	Pancrea
2	chr1:193156200-193216800	Weak transcription	Aorta	Aorta
3	chr1:193159000-193210000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:193162000-193186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:193162000-193186200	Weak transcription	Placenta	Placenta
6	chr1:193162200-193186200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:193162400-193186000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:193167800-193210400	Weak transcription	Ovary	ovary
9	chr1:193168000-193228400	Weak transcription	Stomach Mucosa	stomach
10	chr1:193169000-193190800	Weak transcription	Brain Anterior Caudate	brain
11	chr1:193169400-193186400	Weak transcription	Left Ventricle	heart
12	chr1:193170000-193186200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:193170200-193191200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:193170400-193216000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:193172800-193186200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:193173400-193186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:193174800-193186000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:193176600-193185800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:193176800-193203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:193176800-193209200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:193177000-193206600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:193178800-193189000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr1:193179400-193187400	Weak transcription	Brain Angular Gyrus	brain
24	chr1:193179400-193189200	Strong transcription	Primary T cells from cord blood	blood
25	chr1:193179400-193190800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:193180200-193189200	Strong transcription	Primary B cells from cord blood	blood
27	chr1:193180400-193189200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr1:193180600-193188600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr1:193180600-193200400	Weak transcription	Fetal Heart	heart
30	chr1:193180600-193231200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:193180800-193186200	Weak transcription	Gastric	stomach
32	chr1:193180800-193228200	Weak transcription	Small Intestine	intestine
33	chr1:193181000-193185800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:193181000-193185800	Weak transcription	HUVEC	blood vessel
35	chr1:193181000-193207400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:193181400-193186200	Weak transcription	Spleen	Spleen
37	chr1:193181400-193189000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:193181400-193190800	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:193181400-193198200	Weak transcription	Hela-S3	cervix
40	chr1:193181600-193186200	Strong transcription	NH-A	brain
41	chr1:193181600-193187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:193181600-193187000	Strong transcription	Adipose Nuclei	Adipose
43	chr1:193181600-193188200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr1:193181600-193189000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:193181600-193189000	Strong transcription	Fetal Thymus	thymus
46	chr1:193181800-193189000	Strong transcription	HSMM	muscle
47	chr1:193181800-193210400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr1:193181800-193232800	Weak transcription	Colonic Mucosa	Colon
49	chr1:193182000-193187600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:193182200-193186200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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