Variant report

Variant	rs12025186
Chromosome Location	chr1:193344297-193344298
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10921343	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10921344	0.95[ASN][1000 genomes]
rs10921347	0.85[ASN][1000 genomes]
rs10921348	0.85[ASN][1000 genomes]
rs12025393	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12027971	0.81[ASN][1000 genomes]
rs12032958	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12033428	0.88[ASN][1000 genomes]
rs12034095	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12037055	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12037892	0.85[ASN][1000 genomes]
rs12040365	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12040832	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12041558	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12041893	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12043289	0.84[ASN][1000 genomes]
rs12043960	0.85[ASN][1000 genomes]
rs12044333	0.85[ASN][1000 genomes]
rs12047390	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12048579	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12125235	0.97[ASN][1000 genomes]
rs12145954	0.98[ASN][1000 genomes]
rs1221502	0.81[EUR][1000 genomes]
rs1339961	0.82[EUR][1000 genomes]
rs1361404	0.98[ASN][1000 genomes]
rs1361405	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16835282	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16835304	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16835319	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16835320	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16835338	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1749429	0.81[EUR][1000 genomes]
rs1749430	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1749431	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1749432	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1769999	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1951916	0.85[ASN][1000 genomes]
rs1972345	0.81[EUR][1000 genomes]
rs2050799	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2181858	0.99[ASN][1000 genomes]
rs2209304	0.85[ASN][1000 genomes]
rs2275506	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275507	0.97[ASN][1000 genomes]
rs4403612	0.96[ASN][1000 genomes]
rs4428863	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4556337	0.85[ASN][1000 genomes]
rs4657751	0.84[ASN][1000 genomes]
rs4657854	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4657855	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4657856	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4657858	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs497362	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs515964	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs560900	0.81[EUR][1000 genomes]
rs578639	0.81[EUR][1000 genomes]
rs59264807	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61082463	0.99[ASN][1000 genomes]
rs61648161	0.99[ASN][1000 genomes]
rs6428163	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6428166	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6656737	0.85[ASN][1000 genomes]
rs6667545	0.85[ASN][1000 genomes]
rs6686065	0.99[ASN][1000 genomes]
rs6693734	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6694727	0.88[ASN][1000 genomes]
rs6697195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7367986	0.98[ASN][1000 genomes]
rs7417352	0.81[ASN][1000 genomes]
rs7528595	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7534504	0.91[ASN][1000 genomes]
rs7544027	0.98[ASN][1000 genomes]
rs7550521	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7555466	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004003	chr1:193322299-193477254	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv535253	chr1:193322299-193477254	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3451387	chr1:193335344-193362618	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv832159	chr1:193342434-193525072	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv998663	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv535254	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193326400-193353000	Weak transcription	Fetal Lung	lung
2	chr1:193344200-193344800	Enhancers	Stomach Mucosa	stomach

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