Variant report

Variant	rs10921348
Chromosome Location	chr1:193383089-193383090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193377465..193379956-chr1:193382139..193384799,2	K562	blood:
2	chr1:193377465..193381414-chr1:193382139..193384801,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10921344	0.82[ASN][1000 genomes]
rs10921347	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025186	0.85[ASN][1000 genomes]
rs12025393	0.85[ASN][1000 genomes]
rs12027971	0.95[ASN][1000 genomes]
rs12033428	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12037892	0.99[ASN][1000 genomes]
rs12043289	0.99[ASN][1000 genomes]
rs12043960	0.99[ASN][1000 genomes]
rs12044333	1.00[ASN][1000 genomes]
rs12047390	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12048579	0.84[ASN][1000 genomes]
rs12125235	0.85[ASN][1000 genomes]
rs12145954	0.85[ASN][1000 genomes]
rs1361404	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1361405	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs16835319	0.85[ASN][1000 genomes]
rs16835320	0.85[ASN][1000 genomes]
rs16835338	0.89[ASN][1000 genomes]
rs1951916	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2147304	0.93[ASN][1000 genomes]
rs2181858	0.86[ASN][1000 genomes]
rs2209304	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2275506	0.85[ASN][1000 genomes]
rs2275507	0.83[ASN][1000 genomes]
rs28725257	0.87[ASN][1000 genomes]
rs4403612	0.89[ASN][1000 genomes]
rs4428863	0.89[ASN][1000 genomes]
rs4556337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657751	0.99[ASN][1000 genomes]
rs4657858	0.86[ASN][1000 genomes]
rs61082463	0.86[ASN][1000 genomes]
rs61648161	0.86[ASN][1000 genomes]
rs6656737	1.00[ASN][1000 genomes]
rs6667545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686065	0.86[ASN][1000 genomes]
rs6693734	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6694727	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6697195	0.86[ASN][1000 genomes]
rs7367986	0.85[ASN][1000 genomes]
rs7417352	0.95[ASN][1000 genomes]
rs7544027	0.86[ASN][1000 genomes]
rs7555466	0.86[ASN][1000 genomes]
rs877913	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1004003	chr1:193322299-193477254	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv535253	chr1:193322299-193477254	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832159	chr1:193342434-193525072	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv998663	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv535254	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193378400-193385800	Weak transcription	Ovary	ovary
2	chr1:193378400-193387200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:193379000-193384400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:193379000-193384400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:193381800-193383400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:193381800-193384200	Weak transcription	Fetal Heart	heart
7	chr1:193381800-193385400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:193382000-193386600	Weak transcription	Primary T cells from cord blood	blood
9	chr1:193382000-193386600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:193382200-193385800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:193382200-193385800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:193382200-193386000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:193382200-193386600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:193382200-193387200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:193382400-193383600	Weak transcription	Fetal Lung	lung
16	chr1:193382400-193385200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:193382400-193385800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:193382400-193386200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:193382800-193384600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:193382800-193385400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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