Variant report

Variant	rs6694727
Chromosome Location	chr1:193369701-193369702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10921344	0.85[ASN][1000 genomes]
rs10921347	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10921348	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12025186	0.88[ASN][1000 genomes]
rs12025393	0.87[ASN][1000 genomes]
rs12027971	0.88[ASN][1000 genomes]
rs12033428	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12037892	0.92[ASN][1000 genomes]
rs12040832	0.81[ASN][1000 genomes]
rs12041558	0.81[ASN][1000 genomes]
rs12043289	0.92[ASN][1000 genomes]
rs12043960	0.92[ASN][1000 genomes]
rs12044333	0.93[ASN][1000 genomes]
rs12047390	0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12048579	0.86[ASN][1000 genomes]
rs12125235	0.88[ASN][1000 genomes]
rs12145954	0.87[ASN][1000 genomes]
rs1361404	0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1361405	0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs16835319	0.87[ASN][1000 genomes]
rs16835320	0.87[ASN][1000 genomes]
rs16835338	0.92[ASN][1000 genomes]
rs1951916	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2147304	0.86[ASN][1000 genomes]
rs2181858	0.89[ASN][1000 genomes]
rs2209304	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275506	0.87[ASN][1000 genomes]
rs2275507	0.86[ASN][1000 genomes]
rs28725257	0.80[ASN][1000 genomes]
rs4403612	0.92[ASN][1000 genomes]
rs4428863	0.92[ASN][1000 genomes]
rs4556337	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4657751	0.92[ASN][1000 genomes]
rs4657856	0.80[ASN][1000 genomes]
rs4657858	0.88[ASN][1000 genomes]
rs4657862	0.81[EUR][1000 genomes]
rs61082463	0.89[ASN][1000 genomes]
rs61648161	0.89[ASN][1000 genomes]
rs6656737	0.93[ASN][1000 genomes]
rs6667545	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6686065	0.89[ASN][1000 genomes]
rs6693734	0.91[CHB][hapmap]
rs6697195	0.89[ASN][1000 genomes]
rs7367986	0.87[ASN][1000 genomes]
rs7417352	0.88[ASN][1000 genomes]
rs7534504	0.81[ASN][1000 genomes]
rs7544027	0.88[ASN][1000 genomes]
rs7555466	0.88[ASN][1000 genomes]
rs877913	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1004003	chr1:193322299-193477254	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv535253	chr1:193322299-193477254	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832159	chr1:193342434-193525072	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv998663	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv535254	chr1:193343230-193574004	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6694727	GLRX2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193357800-193375600	Weak transcription	Fetal Lung	lung
2	chr1:193369600-193378000	Weak transcription	Aorta	Aorta

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