Variant report

Variant	rs10921344
Chromosome Location	chr1:193332690-193332691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193326973..193328579-chr1:193331886..193334879,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10921347	0.82[ASN][1000 genomes]
rs10921348	0.82[ASN][1000 genomes]
rs12025186	0.95[ASN][1000 genomes]
rs12025393	0.97[ASN][1000 genomes]
rs12033428	0.85[ASN][1000 genomes]
rs12037892	0.81[ASN][1000 genomes]
rs12040365	0.83[ASN][1000 genomes]
rs12040832	0.96[ASN][1000 genomes]
rs12041558	0.96[ASN][1000 genomes]
rs12043289	0.81[ASN][1000 genomes]
rs12043960	0.82[ASN][1000 genomes]
rs12044333	0.82[ASN][1000 genomes]
rs12047390	0.97[ASN][1000 genomes]
rs12048579	0.97[ASN][1000 genomes]
rs12124282	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12125235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12145954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1361404	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1361405	0.97[ASN][1000 genomes]
rs16835319	0.97[ASN][1000 genomes]
rs16835320	0.97[ASN][1000 genomes]
rs16835338	0.92[ASN][1000 genomes]
rs1770000	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1951916	0.82[ASN][1000 genomes]
rs2050799	0.85[ASN][1000 genomes]
rs2181858	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2209304	0.82[ASN][1000 genomes]
rs2275506	0.97[ASN][1000 genomes]
rs2275507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2486843	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4403612	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4428863	0.92[ASN][1000 genomes]
rs4556337	0.82[ASN][1000 genomes]
rs4657751	0.81[ASN][1000 genomes]
rs4657856	0.95[ASN][1000 genomes]
rs4657858	0.94[ASN][1000 genomes]
rs531327	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61082463	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61648161	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6428163	0.80[ASN][1000 genomes]
rs6656737	0.82[ASN][1000 genomes]
rs6662104	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6667545	0.82[ASN][1000 genomes]
rs6686065	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6693734	0.80[ASN][1000 genomes]
rs6694727	0.85[ASN][1000 genomes]
rs6697195	0.95[ASN][1000 genomes]
rs6702762	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7367986	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7534504	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7543029	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7544027	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7555466	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004003	chr1:193322299-193477254	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv535253	chr1:193322299-193477254	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193326400-193353000	Weak transcription	Fetal Lung	lung
2	chr1:193332000-193337000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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