Variant report

Variant	rs10922299
Chromosome Location	chr1:197812165-197812166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10922304	0.99[ASN][1000 genomes]
rs10922305	0.99[ASN][1000 genomes]
rs12026183	1.00[ASN][1000 genomes]
rs12118454	0.99[ASN][1000 genomes]
rs12140293	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:197808800-197812600	Weak transcription	NHEK	skin
3	chr1:197810400-197812800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:197810800-197814000	Weak transcription	K562	blood
5	chr1:197811200-197812200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:197811200-197812600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:197811600-197812800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:197811800-197812600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:197811800-197813400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:197812000-197812200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:197812000-197812200	Enhancers	Colonic Mucosa	Colon
12	chr1:197812000-197812800	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:197812000-197813400	Weak transcription	NHDF-Ad	bronchial
14	chr1:197812000-197813800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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