Variant report

Variant	rs12026183
Chromosome Location	chr1:197813032-197813033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197811474..197814221-chr1:197972912..197974948,2	K562	blood:
2	chr1:197806907..197812092-chr1:197812928..197815957,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10922288	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap]
rs10922293	0.85[AFR][1000 genomes]
rs10922299	1.00[ASN][1000 genomes]
rs10922304	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10922305	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12118454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12125742	0.85[AFR][1000 genomes]
rs12137370	0.85[AFR][1000 genomes]
rs12140293	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12740849	0.89[CEU][hapmap];0.92[TSI][hapmap]
rs1342694	0.89[CEU][hapmap]
rs1342696	0.88[CEU][hapmap]
rs1499593	1.00[ASW][hapmap];0.89[CEU][hapmap];0.80[GIH][hapmap]
rs1539413	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap]
rs1578720	0.84[CEU][hapmap]
rs1622740	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap]
rs1747811	0.84[CEU][hapmap];0.80[GIH][hapmap];0.85[TSI][hapmap]
rs1747822	0.89[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap]
rs1747823	0.89[CEU][hapmap]
rs1747825	0.89[CEU][hapmap]
rs1775450	0.84[CEU][hapmap];0.80[GIH][hapmap];0.85[TSI][hapmap]
rs1775453	0.84[TSI][hapmap]
rs1775456	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs1775464	0.89[CEU][hapmap]
rs1775465	0.88[CEU][hapmap]
rs1775466	0.89[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap]
rs1775467	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[GIH][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap]
rs1775468	0.88[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap]
rs1775469	0.89[CEU][hapmap]
rs1891497	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs2358774	0.84[CEU][hapmap]
rs2477069	0.89[CEU][hapmap]
rs2477075	0.83[CEU][hapmap];0.80[GIH][hapmap];0.85[TSI][hapmap]
rs2488394	0.89[CEU][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap]
rs2488396	0.89[CEU][hapmap]
rs2488400	0.84[CEU][hapmap]
rs2488411	0.84[CEU][hapmap];0.80[GIH][hapmap];0.84[TSI][hapmap]
rs2497862	0.89[CEU][hapmap]
rs2649556	0.89[CEU][hapmap]
rs4915248	0.85[AFR][1000 genomes]
rs4915566	0.85[AFR][1000 genomes]
rs6697696	0.89[CEU][hapmap]
rs6704186	0.88[CEU][hapmap]
rs7526770	0.85[AFR][1000 genomes]
rs7538522	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:197810800-197814000	Weak transcription	K562	blood
3	chr1:197811800-197813400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:197812000-197813400	Weak transcription	NHDF-Ad	bronchial
5	chr1:197812000-197813800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:197812600-197814600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:197812800-197813800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links