The 2.0 version of rSNPBase

Variant report

Variant rs1891497
Chromosome Location chr1:197659555-197659556
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197645200-197661000 Weak transcription Esophagus oesophagus
2 chr1:197653000-197665200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr1:197653000-197665400 Weak transcription Osteobl bone
4 chr1:197653200-197660600 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr1:197653400-197662000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:197653600-197660600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:197653600-197660800 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:197654600-197662200 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:197656000-197662000 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr1:197656200-197659600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:197656200-197663600 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:197656400-197660400 Weak transcription Primary monocytes fromperipheralblood blood
13 chr1:197657000-197677000 Weak transcription Ovary ovary
14 chr1:197657800-197663400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:197658000-197659600 Strong transcription Rectal Mucosa Donor 29 rectum
16 chr1:197658000-197661000 Weak transcription Liver Liver
17 chr1:197658000-197661000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:197658000-197665200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr1:197658200-197659600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:197658200-197660400 Weak transcription Fetal Lung lung
21 chr1:197658200-197660600 Weak transcription Colonic Mucosa Colon
22 chr1:197658200-197662000 Weak transcription Thymus Thymus
23 chr1:197658200-197662800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:197658200-197668200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:197658400-197659600 Strong transcription Duodenum Mucosa Duodenum
26 chr1:197658400-197659800 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
27 chr1:197658400-197665000 Weak transcription NHEK skin
28 chr1:197658600-197659600 ZNF genes & repeats Primary T cells from cord blood blood
29 chr1:197658600-197662000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:197658800-197659600 Strong transcription Primary B cells from cord blood blood
31 chr1:197658800-197659600 Genic enhancers K562 blood
32 chr1:197658800-197659800 Strong transcription Primary hematopoietic stem cells short term culture blood
33 chr1:197658800-197659800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:197659000-197659600 Strong transcription Fetal Intestine Large intestine
35 chr1:197659000-197659600 Strong transcription Gastric stomach
36 chr1:197659000-197659600 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr1:197659200-197659800 Strong transcription Primary hematopoietic stem cells blood
38 chr1:197659200-197659800 Strong transcription Dnd41 blood
39 chr1:197659400-197659800 Enhancers Left Ventricle heart
40 chr1:197659400-197659800 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr1:197659400-197661000 Weak transcription Fetal Thymus thymus
42 chr1:197659400-197661000 Weak transcription Monocytes-CD14+_RO01746 blood
43 chr1:197659400-197665200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:197659400-197665800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:197659400-197674800 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015