Variant report

Variant	rs10922255
Chromosome Location	chr1:197537029-197537030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197536074..197537804-chr1:197566047..197569001,2	MCF-7	breast:

Extended variants
information (count: 191 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs10442656	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10442660	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494758	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10737692	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754224	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10754225	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10801614	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10922234	0.90[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10922251	0.95[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10922254	0.87[AMR][1000 genomes]
rs10922256	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922257	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922258	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10922261	0.84[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10922262	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12022672	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025476	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12028758	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041661	0.95[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12116508	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12116519	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12117095	0.90[ASN][1000 genomes]
rs12125739	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12127369	0.90[ASN][1000 genomes]
rs12127378	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12129043	0.81[ASN][1000 genomes]
rs12131160	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12133885	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134409	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12563307	0.90[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs12563879	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12565840	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12731480	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12744898	0.95[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12747786	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1342694	0.81[ASN][1000 genomes]
rs1342696	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1362939	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421397	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499592	0.81[ASN][1000 genomes]
rs1499593	0.81[ASN][1000 genomes]
rs1539413	0.89[CEU][hapmap];0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs1573098	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1573099	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1578718	0.90[ASN][1000 genomes]
rs1578719	0.81[ASN][1000 genomes]
rs1578720	0.95[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1592220	0.81[ASN][1000 genomes]
rs1592221	0.81[ASN][1000 genomes]
rs1621898	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1622740	0.81[ASN][1000 genomes]
rs1622904	0.81[ASN][1000 genomes]
rs1623752	0.81[ASN][1000 genomes]
rs1747811	0.95[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1747812	0.81[ASN][1000 genomes]
rs1747814	0.96[ASN][1000 genomes]
rs1747815	0.86[ASN][1000 genomes]
rs1747817	0.82[ASN][1000 genomes]
rs1747818	0.92[ASN][1000 genomes]
rs1747820	0.81[ASN][1000 genomes]
rs1747821	0.81[ASN][1000 genomes]
rs1747822	0.90[ASN][1000 genomes]
rs1747823	0.81[ASN][1000 genomes]
rs1747824	0.81[ASN][1000 genomes]
rs1747825	0.81[ASN][1000 genomes]
rs1747826	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1747827	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1747828	0.81[ASN][1000 genomes]
rs17554990	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs17565558	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17622452	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1775441	0.82[ASN][1000 genomes]
rs1775442	0.82[ASN][1000 genomes]
rs1775443	0.81[ASN][1000 genomes]
rs1775444	0.81[ASN][1000 genomes]
rs1775445	0.81[ASN][1000 genomes]
rs1775446	0.89[ASN][1000 genomes]
rs1775450	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1775451	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1775453	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1775454	0.93[ASN][1000 genomes]
rs1775456	0.89[CEU][hapmap];0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs1775457	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1775458	0.90[ASN][1000 genomes]
rs1775459	0.90[ASN][1000 genomes]
rs1775460	0.90[ASN][1000 genomes]
rs1775461	0.81[ASN][1000 genomes]
rs1775462	0.90[ASN][1000 genomes]
rs1775463	0.81[ASN][1000 genomes]
rs1775464	0.81[ASN][1000 genomes]
rs1775465	0.81[ASN][1000 genomes]
rs1775466	0.81[ASN][1000 genomes]
rs1775467	0.81[ASN][1000 genomes]
rs1775468	0.90[ASN][1000 genomes]
rs1775469	0.81[ASN][1000 genomes]
rs1775470	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1833464	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891497	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1924518	0.81[ASN][1000 genomes]
rs1969	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016722	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111931	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133535	0.81[ASN][1000 genomes]
rs2133536	0.90[ASN][1000 genomes]
rs2147300	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2160969	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2193733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193734	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253257	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2265664	0.81[ASN][1000 genomes]
rs2266033	0.81[ASN][1000 genomes]
rs2266034	0.81[ASN][1000 genomes]
rs2266035	0.81[ASN][1000 genomes]
rs2358774	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2454640	0.90[ASN][1000 genomes]
rs2454641	0.88[ASN][1000 genomes]
rs2476019	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs2476023	0.81[CEU][hapmap]
rs2477060	0.83[ASN][1000 genomes]
rs2477063	0.83[ASN][1000 genomes]
rs2477066	0.81[ASN][1000 genomes]
rs2477069	0.90[ASN][1000 genomes]
rs2477070	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2477071	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477074	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477075	0.94[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477076	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477553	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488387	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2488390	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488394	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2488395	0.90[ASN][1000 genomes]
rs2488396	0.81[ASN][1000 genomes]
rs2488400	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2488402	0.81[ASN][1000 genomes]
rs2488403	0.81[ASN][1000 genomes]
rs2488409	0.97[ASN][1000 genomes]
rs2488410	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2488411	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494269	0.81[JPT][hapmap]
rs2497862	0.81[ASN][1000 genomes]
rs2497863	0.81[ASN][1000 genomes]
rs2649556	0.81[ASN][1000 genomes]
rs2649557	0.81[ASN][1000 genomes]
rs2759656	0.81[CEU][hapmap]
rs2759661	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2797147	0.81[ASN][1000 genomes]
rs2821107	0.81[CEU][hapmap]
rs2821132	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs34261593	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34548547	0.90[ASN][1000 genomes]
rs35170775	0.81[ASN][1000 genomes]
rs3814321	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303099	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4316386	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4915550	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4915551	0.84[ASN][1000 genomes]
rs4915552	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4915554	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915555	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915557	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4915558	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55873039	0.81[ASN][1000 genomes]
rs61829272	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61829341	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61830571	0.81[ASN][1000 genomes]
rs6428410	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6428411	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6428412	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658157	0.90[ASN][1000 genomes]
rs6672023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6676073	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6676795	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677361	0.89[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682689	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685222	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6688993	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689216	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691173	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698921	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523909	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526846	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531581	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7544969	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8179369	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972405	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873074	chr1:197464448-197698103	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv873075	chr1:197464448-197714851	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv548872	chr1:197529218-197644581	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873076	chr1:197529218-197689967	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197478000-197541200	Weak transcription	Aorta	Aorta
2	chr1:197480200-197541200	Weak transcription	Esophagus	oesophagus
3	chr1:197480200-197541200	Weak transcription	Fetal Thymus	thymus
4	chr1:197480400-197541200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:197503200-197541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:197505600-197541000	Weak transcription	Pancreas	Pancrea
7	chr1:197506600-197537600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:197506800-197564600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:197508400-197602400	Weak transcription	Left Ventricle	heart
10	chr1:197525400-197541200	Weak transcription	Ovary	ovary
11	chr1:197526800-197563000	Weak transcription	Osteobl	bone
12	chr1:197529600-197541400	Weak transcription	Colonic Mucosa	Colon
13	chr1:197529800-197548800	Weak transcription	Right Ventricle	heart
14	chr1:197530800-197541200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:197533400-197540200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:197535600-197537400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr1:197535600-197537800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr1:197535600-197538400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:197535600-197538800	ZNF genes & repeats	Dnd41	blood
20	chr1:197535600-197542200	Weak transcription	Small Intestine	intestine
21	chr1:197535800-197537800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:197535800-197538200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:197535800-197538600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:197535800-197539000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:197535800-197539000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr1:197536000-197537400	ZNF genes & repeats	Fetal Lung	lung
27	chr1:197536000-197538400	ZNF genes & repeats	Liver	Liver
28	chr1:197536200-197541000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:197536400-197537200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
30	chr1:197536600-197537400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:197536800-197537200	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr1:197536800-197537400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
33	chr1:197536800-197537800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr1:197537000-197537400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr1:197537000-197537400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr1:197537000-197540200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:197537000-197574600	Weak transcription	NHDF-Ad	bronchial

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