The 2.0 version of rSNPBase

Variant report

Variant rs2488394
Chromosome Location chr1:197735497-197735498
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197695800-197742200 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:197702800-197743800 Weak transcription Esophagus oesophagus
3 chr1:197706800-197741800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr1:197712200-197741600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:197712200-197742000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr1:197714400-197743800 Weak transcription Spleen Spleen
7 chr1:197714600-197741600 Weak transcription Primary T cells fromperipheralblood blood
8 chr1:197714600-197742400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:197714600-197743600 Weak transcription Ovary ovary
10 chr1:197715400-197740000 Weak transcription Left Ventricle heart
11 chr1:197715400-197741800 Weak transcription Gastric stomach
12 chr1:197715600-197738400 Weak transcription Pancreas Pancrea
13 chr1:197716800-197737000 Weak transcription Duodenum Mucosa Duodenum
14 chr1:197717000-197737200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:197718400-197740200 Weak transcription NHDF-Ad bronchial
16 chr1:197718600-197741800 Weak transcription Osteobl bone
17 chr1:197719200-197743800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:197720200-197740600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:197721200-197743000 Weak transcription Fetal Kidney kidney
20 chr1:197722600-197740800 Weak transcription Fetal Lung lung
21 chr1:197722800-197736800 Weak transcription Liver Liver
22 chr1:197729200-197740600 Weak transcription Fetal Intestine Large intestine
23 chr1:197730200-197735800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr1:197730200-197737200 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:197730200-197742600 Weak transcription HMEC breast
26 chr1:197730600-197742600 Weak transcription NH-A brain
27 chr1:197730800-197735800 Enhancers Primary T helper cells PMA-I stimulated --
28 chr1:197731400-197742400 Weak transcription Primary B cells from cord blood blood
29 chr1:197731600-197737200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr1:197731600-197743200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:197731800-197737000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:197731800-197737200 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:197731800-197737600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr1:197732000-197742400 Weak transcription Primary B cells from peripheral blood blood
35 chr1:197732200-197740600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:197732400-197740400 Weak transcription Fetal Intestine Small intestine
37 chr1:197733000-197740600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:197733000-197741600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:197733200-197737000 Weak transcription K562 blood
40 chr1:197733200-197737200 Weak transcription Psoas Muscle Psoas
41 chr1:197733200-197737200 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:197733200-197737600 Weak transcription Small Intestine intestine
43 chr1:197733200-197738200 Weak transcription NHEK skin
44 chr1:197733200-197740600 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:197733200-197740600 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr1:197733200-197741800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:197733200-197742400 Weak transcription Stomach Mucosa stomach
48 chr1:197733400-197737000 Weak transcription Primary hematopoietic stem cells blood
49 chr1:197733400-197737000 Weak transcription Thymus Thymus
50 chr1:197733400-197737000 Enhancers Dnd41 blood

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Last update: Aug 31, 2015