The 2.0 version of rSNPBase

Variant report

Variant rs2477060
Chromosome Location chr1:197713783-197713784
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197695800-197722000 Weak transcription Fetal Lung lung
2 chr1:197695800-197732800 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr1:197695800-197742200 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:197696000-197716000 Weak transcription Duodenum Mucosa Duodenum
5 chr1:197702600-197714200 Weak transcription K562 blood
6 chr1:197702800-197743800 Weak transcription Esophagus oesophagus
7 chr1:197703000-197718400 Weak transcription Dnd41 blood
8 chr1:197706600-197729400 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr1:197706800-197741800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:197708000-197716800 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:197708000-197722600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:197708200-197714400 Weak transcription Ovary ovary
13 chr1:197708400-197714200 Weak transcription Right Atrium heart
14 chr1:197708400-197714400 Weak transcription Left Ventricle heart
15 chr1:197708400-197715200 Weak transcription Pancreas Pancrea
16 chr1:197708400-197716200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:197708400-197719200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:197708400-197719200 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr1:197708400-197721600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:197708400-197722800 Weak transcription Lung lung
21 chr1:197708400-197729800 Weak transcription NHEK skin
22 chr1:197708600-197719200 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:197709600-197716800 Weak transcription Psoas Muscle Psoas
24 chr1:197709800-197718000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:197709800-197723000 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:197710400-197724000 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:197710600-197714200 Weak transcription Primary B cells from cord blood blood
28 chr1:197710600-197718800 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr1:197710600-197722400 Weak transcription Liver Liver
30 chr1:197712000-197716800 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr1:197712200-197714200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:197712200-197716800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:197712200-197731000 Weak transcription Primary monocytes fromperipheralblood blood
34 chr1:197712200-197741600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:197712200-197742000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:197712400-197714200 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:197712400-197714600 Enhancers Primary T killer memory cells from peripheral blood blood
38 chr1:197712400-197717400 Weak transcription Fetal Heart heart
39 chr1:197712600-197714400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:197712800-197714000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:197713000-197732800 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:197713000-197734000 Weak transcription Fetal Thymus thymus
43 chr1:197713200-197718400 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr1:197713200-197720000 Weak transcription Primary T cells from cord blood blood
45 chr1:197713400-197714000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr1:197713600-197714400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:197713600-197714600 Enhancers Primary B cells from peripheral blood blood
48 chr1:197713600-197714600 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr1:197713600-197715400 Enhancers Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015