The 2.0 version of rSNPBase

Variant report

Variant rs6672023
Chromosome Location chr1:197542106-197542107
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:197508400-197602400 Weak transcription Left Ventricle heart
3 chr1:197526800-197563000 Weak transcription Osteobl bone
4 chr1:197529800-197548800 Weak transcription Right Ventricle heart
5 chr1:197535600-197542200 Weak transcription Small Intestine intestine
6 chr1:197537000-197574600 Weak transcription NHDF-Ad bronchial
7 chr1:197537200-197548600 Weak transcription Adipose Nuclei Adipose
8 chr1:197537400-197550400 Weak transcription Fetal Lung lung
9 chr1:197537400-197602200 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr1:197537800-197546000 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr1:197537800-197550400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:197537800-197585600 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:197538000-197546800 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:197538000-197554000 Weak transcription Colon Smooth Muscle Colon
15 chr1:197538200-197544400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:197538600-197563600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:197538800-197548600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:197539000-197543000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:197539000-197544200 Weak transcription Fetal Brain Female brain
20 chr1:197539000-197545400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:197539000-197545800 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:197539000-197554400 Weak transcription Primary B cells from peripheral blood blood
23 chr1:197539000-197556600 Weak transcription Fetal Kidney kidney
24 chr1:197539200-197545200 Weak transcription Rectal Smooth Muscle rectum
25 chr1:197539800-197543800 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:197540000-197544400 Weak transcription Placenta Amnion Placenta Amnion
27 chr1:197540000-197554600 Weak transcription Stomach Smooth Muscle stomach
28 chr1:197540200-197542600 Weak transcription Spleen Spleen
29 chr1:197540600-197543000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:197540600-197545200 Weak transcription Dnd41 blood
31 chr1:197540800-197542800 Strong transcription Duodenum Mucosa Duodenum
32 chr1:197541600-197544800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:197541800-197543400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:197541800-197544400 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:197541800-197545200 Weak transcription Primary hematopoietic stem cells blood
36 chr1:197541800-197546800 Weak transcription Aorta Aorta
37 chr1:197541800-197549400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:197541800-197551000 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:197541800-197566000 Weak transcription Ovary ovary
40 chr1:197541800-197602400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:197541800-197602600 Weak transcription Fetal Thymus thymus
42 chr1:197542000-197543600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:197542000-197543800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr1:197542000-197543800 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:197542000-197543800 Weak transcription Gastric stomach
46 chr1:197542000-197544200 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr1:197542000-197544400 Weak transcription Lung lung
48 chr1:197542000-197545400 Weak transcription Monocytes-CD14+_RO01746 blood
49 chr1:197542000-197545600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr1:197542000-197547400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015