Variant report

Variant rs2488409
Chromosome Location chr1:197644581-197644582
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197596600-197644800 Weak transcription Ovary ovary
2 chr1:197603200-197645000 Weak transcription Esophagus oesophagus
3 chr1:197611800-197644800 Weak transcription Primary monocytes fromperipheralblood blood
4 chr1:197612800-197644800 Weak transcription Fetal Intestine Large intestine
5 chr1:197612800-197645000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:197628800-197645000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:197629000-197644600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:197629000-197645000 Weak transcription Dnd41 blood
9 chr1:197629000-197645200 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr1:197633800-197644600 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr1:197638000-197644600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:197638600-197644600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:197640600-197644600 Weak transcription K562 blood
14 chr1:197640800-197644800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:197640800-197644800 Weak transcription Fetal Intestine Small intestine
16 chr1:197640800-197647000 Weak transcription Small Intestine intestine
17 chr1:197640800-197657600 Weak transcription Primary hematopoietic stem cells blood
18 chr1:197641800-197644600 Weak transcription A549 lung
19 chr1:197641800-197645000 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:197642000-197644600 Enhancers Fetal Lung lung
21 chr1:197642800-197645400 Enhancers iPS-15b Cell Line embryonic stem cell
22 chr1:197642800-197645800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:197642800-197646800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr1:197643200-197645600 Enhancers HUES64 Cell Line embryonic stem cell
25 chr1:197643400-197645400 Enhancers Cortex derived primary cultured neurospheres brain
26 chr1:197643600-197644600 Weak transcription Right Atrium heart
27 chr1:197643600-197644600 Enhancers NHDF-Ad bronchial
28 chr1:197643600-197645000 Weak transcription Fetal Muscle Leg muscle
29 chr1:197643600-197645000 Weak transcription Pancreas Pancrea
30 chr1:197643800-197646800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:197644000-197644800 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr1:197644000-197645000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr1:197644000-197645000 Weak transcription iPS-20b Cell Line embryonic stem cell
34 chr1:197644000-197656000 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:197644200-197644600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:197644200-197645600 Enhancers Fetal Brain Female brain
37 chr1:197644200-197645800 Enhancers Fetal Brain Male brain
38 chr1:197644400-197644600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:197644400-197644600 Active TSS Liver Liver
40 chr1:197644400-197644600 Enhancers Osteobl bone
41 chr1:197644400-197644800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:197644400-197644800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:197644400-197645000 Active TSS Stomach Mucosa stomach
44 chr1:197644400-197645200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:197644400-197645400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
46 chr1:197644400-197645600 Enhancers HUES48 Cell Line embryonic stem cell

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