The 2.0 version of rSNPBase

Variant report

Variant rs2488396
Chromosome Location chr1:197742171-197742172
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197695800-197742200 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:197702800-197743800 Weak transcription Esophagus oesophagus
3 chr1:197714400-197743800 Weak transcription Spleen Spleen
4 chr1:197714600-197742400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr1:197714600-197743600 Weak transcription Ovary ovary
6 chr1:197719200-197743800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:197721200-197743000 Weak transcription Fetal Kidney kidney
8 chr1:197730200-197742600 Weak transcription HMEC breast
9 chr1:197730600-197742600 Weak transcription NH-A brain
10 chr1:197731400-197742400 Weak transcription Primary B cells from cord blood blood
11 chr1:197731600-197743200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:197732000-197742400 Weak transcription Primary B cells from peripheral blood blood
13 chr1:197733200-197742400 Weak transcription Stomach Mucosa stomach
14 chr1:197733400-197743000 Weak transcription A549 lung
15 chr1:197734200-197742600 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr1:197734600-197742200 Weak transcription NHLF lung
17 chr1:197735200-197743800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:197736200-197742400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
19 chr1:197736200-197743200 Weak transcription Right Ventricle heart
20 chr1:197737200-197742800 Weak transcription Fetal Stomach stomach
21 chr1:197737400-197743600 Weak transcription Fetal Muscle Trunk muscle
22 chr1:197737800-197742400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:197737800-197743000 Weak transcription Fetal Muscle Leg muscle
24 chr1:197738800-197742200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:197739000-197743600 Weak transcription Placenta Amnion Placenta Amnion
26 chr1:197739600-197742400 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:197740000-197742200 Enhancers Rectal Mucosa Donor 31 rectum
28 chr1:197740200-197742600 Enhancers Small Intestine intestine
29 chr1:197740200-197743000 Enhancers Fetal Heart heart
30 chr1:197740200-197743200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
31 chr1:197740400-197742400 Enhancers Primary T helper cells PMA-I stimulated --
32 chr1:197740400-197742600 Enhancers Monocytes-CD14+_RO01746 blood
33 chr1:197740400-197742800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:197740400-197743800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:197740600-197742800 Enhancers Primary T killer memory cells from peripheral blood blood
36 chr1:197740600-197742800 Enhancers Skeletal Muscle Male skeletal muscle
37 chr1:197740600-197743000 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr1:197740600-197743000 Enhancers Fetal Intestine Large intestine
39 chr1:197740600-197743400 Enhancers Primary monocytes fromperipheralblood blood
40 chr1:197740600-197743400 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr1:197740800-197742200 Enhancers Primary T regulatory cells fromperipheralblood blood
42 chr1:197740800-197742800 Enhancers Fetal Lung lung
43 chr1:197740800-197742800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
44 chr1:197740800-197742800 Weak transcription HSMMtube muscle
45 chr1:197740800-197743200 Enhancers Breast Myoepithelial Primary Cells Breast
46 chr1:197740800-197743400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:197741000-197742400 Enhancers Fetal Brain Female brain
48 chr1:197741000-197742600 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr1:197741000-197743000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr1:197741000-197743000 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015