The 2.0 version of rSNPBase

Variant report

Variant rs2253257
Chromosome Location chr1:197626708-197626709
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197553000-197629800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:197593600-197628400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr1:197596600-197644800 Weak transcription Ovary ovary
4 chr1:197598800-197628600 Weak transcription NHDF-Ad bronchial
5 chr1:197599200-197628600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:197602800-197641400 Weak transcription Primary B cells from peripheral blood blood
7 chr1:197603000-197627800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:197603000-197628600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:197603000-197632400 Weak transcription Fetal Lung lung
10 chr1:197603000-197632600 Weak transcription Small Intestine intestine
11 chr1:197603200-197628400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:197603200-197645000 Weak transcription Esophagus oesophagus
13 chr1:197603400-197643400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:197604000-197628200 Weak transcription Liver Liver
15 chr1:197604200-197635200 Weak transcription Aorta Aorta
16 chr1:197608400-197628400 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:197608600-197631400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:197609000-197628000 Weak transcription Fetal Kidney kidney
19 chr1:197610200-197640000 Weak transcription Fetal Intestine Small intestine
20 chr1:197611800-197644800 Weak transcription Primary monocytes fromperipheralblood blood
21 chr1:197612000-197628200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:197612000-197628400 Weak transcription Adipose Nuclei Adipose
23 chr1:197612200-197642200 Weak transcription Primary B cells from cord blood blood
24 chr1:197612400-197628600 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:197612400-197628600 Weak transcription Fetal Thymus thymus
26 chr1:197612600-197628000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:197612800-197644800 Weak transcription Fetal Intestine Large intestine
28 chr1:197612800-197645000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:197613200-197628200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:197613800-197628200 Weak transcription Primary T cells fromperipheralblood blood
31 chr1:197613800-197628400 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:197614000-197628600 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr1:197615600-197628800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:197619800-197633600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:197620600-197628400 Weak transcription Dnd41 blood
36 chr1:197621400-197628200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:197621400-197628800 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr1:197621400-197629800 Weak transcription Duodenum Mucosa Duodenum
39 chr1:197621600-197628600 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr1:197624400-197627400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:197626200-197626800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:197626400-197627200 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
43 chr1:197626400-197627200 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr1:197626400-197627400 Strong transcription Primary T cells from cord blood blood
45 chr1:197626400-197627400 Strong transcription Primary hematopoietic stem cells short term culture blood
46 chr1:197626400-197627400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:197626600-197627400 Strong transcription Monocytes-CD14+_RO01746 blood
48 chr1:197626600-197628400 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015