Variant report

Variant	rs10922333
Chromosome Location	chr1:197918487-197918488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10922334	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11577674	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11583952	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12024850	0.92[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12046958	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12727777	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12729300	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12750987	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1909507	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2358777	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34100116	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3894699	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4147202	0.84[ASW][hapmap];0.93[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10922333	KCNT2	cis	cerebellum	SCAN
rs10922333	B3GALT2	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197917200-197919600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:197917400-197918600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:197917400-197918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:197917400-197918600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:197917400-197919200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:197917400-197919400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:197917400-197919400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:197917400-197919400	Enhancers	Dnd41	blood
9	chr1:197917400-197919600	Enhancers	Primary T cells from cord blood	blood
10	chr1:197917400-197919800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:197917600-197918600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:197917600-197918600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:197917600-197919400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:197917600-197919400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:197917800-197919000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:197917800-197919000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:197917800-197919200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:197918400-197918600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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