Variant report

Variant	rs3894699
Chromosome Location	chr1:197937402-197937403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10922333	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10922334	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11577674	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs11583952	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12024850	0.89[YRI][hapmap]
rs12046958	0.84[JPT][hapmap]
rs12727777	0.89[ASN][1000 genomes]
rs12729300	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12750987	0.83[JPT][hapmap];0.88[YRI][hapmap]
rs1909507	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2358777	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4147202	0.89[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3894699	KCNT2	cis	cerebellum	SCAN
rs3894699	ZBTB41	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197936600-197937600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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