Variant report

Variant	rs10930447
Chromosome Location	chr2:171762792-171762793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11682957	0.81[JPT][hapmap]
rs11899713	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11904750	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12465605	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12467411	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12468326	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12473741	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs16859026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859028	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859050	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs16859076	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17505447	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17608242	0.90[EUR][1000 genomes]
rs2059723	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2081767	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081768	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2098999	0.82[CHB][hapmap]
rs2356422	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3731993	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3755124	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs3755126	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs3770436	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770439	1.00[CEU][hapmap]
rs3886463	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668343	0.82[CHB][hapmap]
rs4668354	0.82[CHB][hapmap]
rs57556696	0.96[ASN][1000 genomes]
rs930035	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171762000-171762800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:171762200-171762800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:171762200-171762800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:171762200-171762800	Bivalent Enhancer	HepG2	liver
5	chr2:171762200-171762800	Enhancers	K562	blood
6	chr2:171762600-171771600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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