Variant report

Variant	rs3770436
Chromosome Location	chr2:171822576-171822577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171810433..171812657-chr2:171821270..171823901,3	K562	blood:
2	chr2:171785538..171787134-chr2:171821536..171823549,2	K562	blood:
3	chr2:171784385..171789962-chr2:171821380..171827816,10	K562	blood:
4	chr2:171821806..171826115-chr2:171826992..171831099,6	MCF-7	breast:
5	chr2:171822067..171823697-chr2:172289864..172292836,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123600	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000115827	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10930447	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11682957	0.81[JPT][hapmap]
rs11899713	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11904750	0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12467411	1.00[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs12468326	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12473741	1.00[ASW][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs16859026	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16859028	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16859050	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs16859076	0.92[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16859157	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17505447	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17608242	0.90[EUR][1000 genomes]
rs1863679	0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs2059723	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2081767	0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2081768	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2098999	0.81[CHB][hapmap]
rs2356422	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2356424	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3731993	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3755124	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs3755126	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs3770419	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3886463	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4668343	0.81[CHB][hapmap]
rs4668354	0.81[CHB][hapmap]
rs57556696	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61233426	0.90[ASN][1000 genomes]
rs930035	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171787600-171829800	Weak transcription	Right Atrium	heart
2	chr2:171797000-171830600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:171803600-171824600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:171803800-171824400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:171803800-171825600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr2:171804000-171825000	Strong transcription	HepG2	liver
7	chr2:171804800-171824800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:171804800-171825800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:171805000-171824800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:171805000-171825000	Strong transcription	Dnd41	blood
11	chr2:171805200-171824800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:171805400-171824600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:171805400-171825000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:171805400-171825200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:171805400-171825400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:171805400-171825600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr2:171805400-171825800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:171805400-171825800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:171805600-171824600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr2:171805600-171824600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:171805600-171825800	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr2:171805800-171823800	Strong transcription	NHDF-Ad	bronchial
23	chr2:171805800-171825200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr2:171805800-171825800	Strong transcription	Placenta	Placenta
25	chr2:171805800-171825800	Strong transcription	Osteobl	bone
26	chr2:171805800-171826200	Strong transcription	Fetal Thymus	thymus
27	chr2:171806000-171823400	Strong transcription	Liver	Liver
28	chr2:171806000-171823800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr2:171806000-171824400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:171806000-171824400	Strong transcription	Left Ventricle	heart
31	chr2:171806000-171824800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:171806000-171825000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:171806000-171825000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr2:171806000-171825200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:171806000-171825200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:171806000-171825400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr2:171806000-171825800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr2:171806000-171826000	Strong transcription	Fetal Stomach	stomach
39	chr2:171806000-171826200	Strong transcription	Fetal Intestine Large	intestine
40	chr2:171806000-171826200	Strong transcription	Thymus	Thymus
41	chr2:171806000-171826800	Strong transcription	Fetal Muscle Leg	muscle
42	chr2:171806200-171824000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:171807600-171824800	Strong transcription	Primary B cells from cord blood	blood
44	chr2:171807800-171824000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr2:171808200-171824400	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:171808200-171824600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr2:171808600-171825000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr2:171809200-171826200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:171811400-171830200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr2:171814600-171829400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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