Variant report

Variant	rs16859157
Chromosome Location	chr2:171970358-171970359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171968241..171970769-chr2:171970992..171972766,2	K562	blood:
2	chr2:171964302..171967137-chr2:171970157..171973389,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10169565	1.00[CEU][hapmap]
rs10171850	0.81[CHB][hapmap]
rs10193428	1.00[CEU][hapmap]
rs1019710	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1019711	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10203448	1.00[CEU][hapmap]
rs1035827	0.81[CHB][hapmap]
rs11696064	0.81[CHB][hapmap]
rs11883894	0.83[ASN][1000 genomes]
rs11904750	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12464487	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12467411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12469418	0.83[ASN][1000 genomes]
rs12469870	0.81[ASN][1000 genomes]
rs12470359	0.80[ASN][1000 genomes]
rs12473741	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477413	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12477548	0.83[ASN][1000 genomes]
rs12477555	0.83[ASN][1000 genomes]
rs12477649	0.81[CHB][hapmap]
rs12478336	0.80[ASN][1000 genomes]
rs12618898	0.81[CHB][hapmap]
rs13410683	0.91[CHB][hapmap]
rs16859050	0.82[CHB][hapmap]
rs16859076	1.00[CEU][hapmap]
rs16859189	0.81[ASN][1000 genomes]
rs16859203	0.81[ASN][1000 genomes]
rs16859206	0.81[ASN][1000 genomes]
rs16859221	1.00[CEU][hapmap]
rs17505447	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1863679	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1989612	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1989613	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2059723	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2081767	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2081768	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2098999	0.83[CHB][hapmap]
rs2356422	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2356424	0.88[AMR][1000 genomes]
rs2356517	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35614064	0.81[ASN][1000 genomes]
rs3731993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs3755124	0.82[CHB][hapmap]
rs3755126	0.82[CHB][hapmap]
rs3770419	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3770436	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3770439	1.00[CEU][hapmap]
rs4305237	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4331471	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4365428	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4667673	0.83[CHB][hapmap]
rs4668343	0.83[CHB][hapmap]
rs4668354	0.83[CHB][hapmap]
rs56216250	0.82[ASN][1000 genomes]
rs57335774	0.83[ASN][1000 genomes]
rs57851561	0.83[AMR][1000 genomes]
rs58126203	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58289498	0.80[ASN][1000 genomes]
rs58441581	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs58712847	0.80[ASN][1000 genomes]
rs59083018	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60091560	0.83[ASN][1000 genomes]
rs60241632	0.83[AMR][1000 genomes]
rs60724749	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60729063	0.80[ASN][1000 genomes]
rs60928633	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs728456	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs728457	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7421377	0.82[CHB][hapmap]
rs7423767	0.83[ASN][1000 genomes]
rs754058	0.81[CHB][hapmap]
rs7582822	0.81[CHB][hapmap]
rs930035	0.86[CHB][hapmap]
rs930036	0.81[CHB][hapmap]
rs964172	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834456	chr2:171874210-172014659	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171900400-171975400	Weak transcription	Aorta	Aorta
2	chr2:171916600-171970800	Weak transcription	Ovary	ovary
3	chr2:171917000-172000800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:171933200-171981000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:171943400-171973800	Weak transcription	NH-A	brain
6	chr2:171944800-171977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:171949200-171973200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:171950600-171972000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:171950600-171991200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:171954400-171970400	Weak transcription	Hela-S3	cervix
11	chr2:171954600-171973400	Weak transcription	Small Intestine	intestine
12	chr2:171954600-171987200	Weak transcription	Fetal Stomach	stomach
13	chr2:171955600-171973200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:171955800-171980800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:171956400-171980200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:171957000-171970600	Weak transcription	Placenta	Placenta
17	chr2:171957000-171972200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:171957000-171975400	Weak transcription	Right Ventricle	heart
19	chr2:171957200-171970800	Weak transcription	Primary B cells from cord blood	blood
20	chr2:171957200-171970800	Weak transcription	Liver	Liver
21	chr2:171957200-171972000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:171957200-171972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:171957200-171973400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:171957200-171973800	Weak transcription	Esophagus	oesophagus
25	chr2:171957200-171975800	Weak transcription	Fetal Lung	lung
26	chr2:171957200-171976200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:171957200-171977800	Weak transcription	Thymus	Thymus
28	chr2:171957200-171978000	Weak transcription	NHEK	skin
29	chr2:171957200-171980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:171957200-171980000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:171957200-171982400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:171957200-171986000	Weak transcription	Spleen	Spleen
33	chr2:171957200-172010400	Weak transcription	HSMM	muscle
34	chr2:171957400-171970600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:171957400-171970800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:171957400-171971400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr2:171957400-171972800	Weak transcription	Fetal Muscle Leg	muscle
38	chr2:171957400-171975800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:171957600-171970600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:171957600-171971400	Weak transcription	A549	lung
41	chr2:171957600-171975400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr2:171959600-171975800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr2:171959600-171980000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr2:171961200-171970800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr2:171961600-171973200	Weak transcription	Primary T cells from cord blood	blood
46	chr2:171961600-171973400	Weak transcription	Osteobl	bone
47	chr2:171961600-171975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr2:171962200-171972000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:171963800-171975600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr2:171964000-171971200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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