Variant report

Variant	rs4331471
Chromosome Location	chr2:172036804-172036805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10171850	0.84[CHB][hapmap]
rs10193428	1.00[CEU][hapmap]
rs1019710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1019711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10203448	1.00[CEU][hapmap]
rs1035827	0.84[CHB][hapmap]
rs11696064	0.84[CHB][hapmap]
rs11883894	1.00[ASN][1000 genomes]
rs12464487	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12467411	0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs12469418	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470359	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12473741	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12477413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477548	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477555	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477649	0.84[CHB][hapmap]
rs12478336	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410683	0.84[CHB][hapmap]
rs16859157	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16859189	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859203	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859206	0.98[ASN][1000 genomes]
rs16859221	1.00[CEU][hapmap]
rs1863679	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1989612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989613	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs2356517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614064	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3731993	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs3770419	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4305237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56216250	0.98[ASN][1000 genomes]
rs56686274	0.88[AMR][1000 genomes]
rs57335774	1.00[ASN][1000 genomes]
rs57851561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58126203	0.81[EUR][1000 genomes]
rs58289498	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58441581	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58712847	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59083018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60091560	1.00[ASN][1000 genomes]
rs60241632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60724749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60729063	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60928633	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs728455	0.80[ASN][1000 genomes]
rs728456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7421377	0.85[CHB][hapmap]
rs7423767	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754058	0.84[CHB][hapmap]
rs7560360	0.80[ASN][1000 genomes]
rs7582822	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs930036	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172031600-172037000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:172035600-172037000	Enhancers	GM12878-XiMat	blood
3	chr2:172036000-172038000	Weak transcription	NHDF-Ad	bronchial
4	chr2:172036200-172037400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:172036400-172037200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:172036600-172037400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:172036600-172038600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:172036800-172037000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:172036800-172038000	Enhancers	K562	blood
10	chr2:172036800-172038400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:172036800-172038800	Enhancers	NHEK	skin

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