Variant report

Variant	rs12477555
Chromosome Location	chr2:172033165-172033166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172033128..172034905-chr2:172053758..172055299,2	K562	blood:
2	chr2:172026236..172029009-chr2:172032109..172035323,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1019710	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1019711	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11883894	1.00[ASN][1000 genomes]
rs12464487	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12467411	0.81[EUR][1000 genomes]
rs12469418	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469870	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470359	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12473741	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12477413	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477548	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478336	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16859157	0.83[ASN][1000 genomes]
rs16859189	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859203	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859206	0.98[ASN][1000 genomes]
rs1863679	0.97[ASN][1000 genomes]
rs1989612	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989613	1.00[ASN][1000 genomes]
rs2356517	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35614064	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770419	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4305237	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4331471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365428	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56216250	0.98[ASN][1000 genomes]
rs56686274	0.81[AMR][1000 genomes]
rs57335774	1.00[ASN][1000 genomes]
rs57851561	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58126203	0.81[EUR][1000 genomes]
rs58289498	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58441581	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58712847	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59083018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60091560	1.00[ASN][1000 genomes]
rs60241632	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60724749	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60729063	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60928633	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs728455	0.80[ASN][1000 genomes]
rs728456	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728457	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7423767	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560360	0.80[ASN][1000 genomes]
rs7582822	0.80[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172030600-172035600	Weak transcription	GM12878-XiMat	blood
2	chr2:172031600-172036800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:172031600-172036800	Weak transcription	NHEK	skin
4	chr2:172031600-172037000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:172031800-172033400	Weak transcription	Placenta	Placenta
6	chr2:172032800-172033200	Bivalent Enhancer	HepG2	liver
7	chr2:172032800-172033400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:172032800-172033400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:172032800-172033600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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