Variant report

Variant	rs16859206
Chromosome Location	chr2:172043803-172043804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172027146..172029899-chr2:172042462..172045335,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10171850	0.81[CHB][hapmap]
rs1019710	0.99[ASN][1000 genomes]
rs1019711	0.99[ASN][1000 genomes]
rs1035827	0.81[CHB][hapmap]
rs10490606	0.94[TSI][hapmap]
rs11696064	0.81[CHB][hapmap]
rs11883894	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12464487	0.99[ASN][1000 genomes]
rs12467411	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs12469418	0.98[ASN][1000 genomes]
rs12469870	1.00[ASN][1000 genomes]
rs12470359	0.99[ASN][1000 genomes]
rs12473741	0.85[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs12477413	0.99[ASN][1000 genomes]
rs12477548	0.98[ASN][1000 genomes]
rs12477555	0.98[ASN][1000 genomes]
rs12477649	0.81[CHB][hapmap]
rs12478336	0.99[ASN][1000 genomes]
rs13389859	0.94[TSI][hapmap]
rs13410683	0.85[CHB][hapmap]
rs16823191	0.82[TSI][hapmap]
rs16859121	0.94[TSI][hapmap]
rs16859157	0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs16859177	0.94[TSI][hapmap]
rs16859189	0.98[ASN][1000 genomes]
rs16859203	1.00[ASN][1000 genomes]
rs1863679	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1989612	0.98[ASN][1000 genomes]
rs1989613	1.00[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2356517	0.98[ASN][1000 genomes]
rs2723248	0.94[TSI][hapmap]
rs2883940	0.94[TSI][hapmap]
rs35614064	1.00[ASN][1000 genomes]
rs3731993	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs3770419	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4305237	0.99[ASN][1000 genomes]
rs4331471	0.98[ASN][1000 genomes]
rs4365428	0.99[ASN][1000 genomes]
rs56216250	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56267332	0.80[EUR][1000 genomes]
rs57335774	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57851561	0.93[ASN][1000 genomes]
rs58289498	0.99[ASN][1000 genomes]
rs58441581	0.94[ASN][1000 genomes]
rs58712847	0.99[ASN][1000 genomes]
rs59083018	0.99[ASN][1000 genomes]
rs60091560	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60241632	0.93[ASN][1000 genomes]
rs60724749	0.99[ASN][1000 genomes]
rs60729063	0.99[ASN][1000 genomes]
rs728456	0.98[ASN][1000 genomes]
rs728457	0.98[ASN][1000 genomes]
rs73017286	0.82[EUR][1000 genomes]
rs7421377	0.81[CHB][hapmap]
rs7423767	0.98[ASN][1000 genomes]
rs754058	0.81[CHB][hapmap]
rs7580756	0.80[EUR][1000 genomes]
rs7582822	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs930036	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172041800-172044000	Enhancers	NHLF	lung
2	chr2:172043800-172044200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:172043800-172044200	Enhancers	Colon Smooth Muscle	Colon
4	chr2:172043800-172044400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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