Variant report

Variant	rs35614064
Chromosome Location	chr2:172043397-172043398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172027146..172029899-chr2:172042462..172045335,2	K562	blood:
2	chr2:172037922..172040353-chr2:172040710..172043498,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1019710	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1019711	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11883894	0.98[ASN][1000 genomes]
rs12464487	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12467411	0.81[EUR][1000 genomes]
rs12469418	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12469870	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470359	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12473741	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12477413	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477548	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477555	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12478336	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16859157	0.81[ASN][1000 genomes]
rs16859189	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859203	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859206	1.00[ASN][1000 genomes]
rs1863679	0.94[ASN][1000 genomes]
rs1989612	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1989613	0.98[ASN][1000 genomes]
rs2356517	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770419	1.00[EUR][1000 genomes]
rs4305237	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4331471	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365428	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56216250	0.99[ASN][1000 genomes]
rs57335774	0.98[ASN][1000 genomes]
rs57851561	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58126203	0.81[EUR][1000 genomes]
rs58289498	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58441581	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58712847	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59083018	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60091560	0.98[ASN][1000 genomes]
rs60241632	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60724749	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60729063	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60928633	1.00[EUR][1000 genomes]
rs728456	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728457	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7423767	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172041800-172043400	Enhancers	Colon Smooth Muscle	Colon
2	chr2:172041800-172044000	Enhancers	NHLF	lung
3	chr2:172043000-172043400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:172043200-172043400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:172043200-172043600	Weak transcription	HSMMtube	muscle

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