Variant report

Variant	rs11883894
Chromosome Location	chr2:172034974-172034975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172014804..172017655-chr2:172034018..172036409,2	MCF-7	breast:
2	chr2:172026236..172029009-chr2:172032109..172035323,3	K562	blood:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1019710	0.98[ASN][1000 genomes]
rs1019711	0.98[ASN][1000 genomes]
rs12464487	0.98[ASN][1000 genomes]
rs12469418	1.00[ASN][1000 genomes]
rs12469870	0.98[ASN][1000 genomes]
rs12470359	0.97[ASN][1000 genomes]
rs12473741	0.83[ASN][1000 genomes]
rs12477413	0.98[ASN][1000 genomes]
rs12477548	1.00[ASN][1000 genomes]
rs12477555	1.00[ASN][1000 genomes]
rs12478336	0.97[ASN][1000 genomes]
rs16859157	0.83[ASN][1000 genomes]
rs16859189	0.98[ASN][1000 genomes]
rs16859203	0.98[ASN][1000 genomes]
rs16859206	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1863679	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1989612	1.00[ASN][1000 genomes]
rs1989613	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356517	1.00[ASN][1000 genomes]
rs35614064	0.98[ASN][1000 genomes]
rs3770419	0.81[ASN][1000 genomes]
rs4305237	0.98[ASN][1000 genomes]
rs4331471	1.00[ASN][1000 genomes]
rs4365428	0.98[ASN][1000 genomes]
rs56216250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57335774	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57851561	0.93[ASN][1000 genomes]
rs58289498	0.97[ASN][1000 genomes]
rs58441581	0.97[ASN][1000 genomes]
rs58712847	0.97[ASN][1000 genomes]
rs59083018	0.98[ASN][1000 genomes]
rs60091560	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60241632	0.93[ASN][1000 genomes]
rs60724749	0.98[ASN][1000 genomes]
rs60729063	0.97[ASN][1000 genomes]
rs60928633	0.82[ASN][1000 genomes]
rs61105084	0.82[EUR][1000 genomes]
rs728455	0.80[ASN][1000 genomes]
rs728456	1.00[ASN][1000 genomes]
rs728457	1.00[ASN][1000 genomes]
rs73017262	0.82[EUR][1000 genomes]
rs73017268	0.82[EUR][1000 genomes]
rs7423767	1.00[ASN][1000 genomes]
rs7560360	0.80[ASN][1000 genomes]
rs7582822	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172030600-172035600	Weak transcription	GM12878-XiMat	blood
2	chr2:172031600-172036800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:172031600-172036800	Weak transcription	NHEK	skin
4	chr2:172031600-172037000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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