Variant report

Variant	rs16859203
Chromosome Location	chr2:172043754-172043755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172027146..172029899-chr2:172042462..172045335,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10169565	1.00[CEU][hapmap]
rs10171850	0.81[CHB][hapmap]
rs10193428	1.00[CEU][hapmap]
rs1019710	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1019711	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10203448	1.00[CEU][hapmap]
rs1035827	0.81[CHB][hapmap]
rs11696064	0.81[CHB][hapmap]
rs11883894	0.98[ASN][1000 genomes]
rs12464487	0.99[ASN][1000 genomes]
rs12467411	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs12469418	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12469870	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470359	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12473741	0.85[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.80[ASN][1000 genomes]
rs12477413	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477548	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477555	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477649	0.81[CHB][hapmap]
rs12478336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13410683	0.85[CHB][hapmap]
rs16859157	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs16859189	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859206	1.00[ASN][1000 genomes]
rs16859221	1.00[CEU][hapmap]
rs1863679	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1989612	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1989613	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs2356517	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35614064	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731993	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs3770419	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs4305237	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4331471	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365428	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56216250	0.99[ASN][1000 genomes]
rs56686274	0.80[AMR][1000 genomes]
rs57335774	0.98[ASN][1000 genomes]
rs57851561	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58289498	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58441581	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58712847	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59083018	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60091560	0.98[ASN][1000 genomes]
rs60241632	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60724749	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60729063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60928633	0.83[EUR][1000 genomes]
rs728456	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728457	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7421377	0.81[CHB][hapmap]
rs7423767	0.98[ASN][1000 genomes]
rs754058	0.81[CHB][hapmap]
rs7582822	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs930036	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172041800-172044000	Enhancers	NHLF	lung
2	chr2:172043400-172043800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:172043400-172043800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:172043400-172043800	Weak transcription	Colon Smooth Muscle	Colon

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