Variant report

Variant	rs56686274
Chromosome Location	chr2:172041346-172041347
allele	-/TTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172028540..172030907-chr2:172040306..172041978,2	K562	blood:
2	chr2:172037922..172040353-chr2:172040710..172043498,2	MCF-7	breast:
3	chr2:172037115..172039035-chr2:172040563..172042289,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1019710	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1019711	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12464487	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12469418	0.83[AMR][1000 genomes]
rs12469870	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12470359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12477413	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12477548	0.83[AMR][1000 genomes]
rs12477555	0.81[AMR][1000 genomes]
rs12478336	0.80[AMR][1000 genomes]
rs16859189	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16859203	0.80[AMR][1000 genomes]
rs1989612	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2356517	0.88[AMR][1000 genomes]
rs4305237	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4331471	0.88[AMR][1000 genomes]
rs4365428	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56216250	0.80[ASN][1000 genomes]
rs57851561	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs58441581	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59083018	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60241632	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs60724749	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60729063	0.80[AMR][1000 genomes]
rs728456	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs728457	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7423767	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172037200-172041800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:172038400-172041800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:172038400-172042000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:172038600-172041600	Weak transcription	NHDF-Ad	bronchial
5	chr2:172038600-172041800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:172038800-172041800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:172038800-172042200	Weak transcription	NHEK	skin
8	chr2:172039000-172042000	Weak transcription	K562	blood
9	chr2:172040600-172042000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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