Variant report

Variant	rs16859189
Chromosome Location	chr2:172041825-172041826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172028540..172030907-chr2:172040306..172041978,2	K562	blood:
2	chr2:172037922..172040353-chr2:172040710..172043498,2	MCF-7	breast:
3	chr2:172037115..172039035-chr2:172040563..172042289,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10171850	0.88[CHB][hapmap]
rs1019710	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1019711	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1035827	0.88[CHB][hapmap]
rs11696064	0.88[CHB][hapmap]
rs11883894	0.98[ASN][1000 genomes]
rs12464487	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12467411	0.94[CHB][hapmap];0.81[EUR][1000 genomes]
rs12469418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12469870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12473741	0.93[CHB][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12477413	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12477548	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477555	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477649	0.88[CHB][hapmap]
rs12478336	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13410683	0.83[CHB][hapmap]
rs16859157	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs16859203	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859206	0.98[ASN][1000 genomes]
rs1863679	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs1989612	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1989613	1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs2356517	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35614064	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3731993	0.94[CHB][hapmap]
rs3770419	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs4305237	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4331471	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365428	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56216250	0.99[ASN][1000 genomes]
rs56686274	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57335774	0.98[ASN][1000 genomes]
rs57851561	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58126203	0.81[EUR][1000 genomes]
rs58289498	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58441581	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58712847	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59083018	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60091560	0.98[ASN][1000 genomes]
rs60241632	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60724749	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60729063	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60928633	1.00[EUR][1000 genomes]
rs728456	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728457	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7421377	0.89[CHB][hapmap]
rs7423767	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs754058	0.88[CHB][hapmap]
rs7582822	0.88[CHB][hapmap]
rs930035	0.82[CHB][hapmap]
rs930036	0.88[CHB][hapmap]
rs964172	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522291	chr2:172034918-172043803	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172038400-172042000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:172038800-172042200	Weak transcription	NHEK	skin
3	chr2:172039000-172042000	Weak transcription	K562	blood
4	chr2:172040600-172042000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:172041600-172042200	Enhancers	Fetal Intestine Large	intestine
6	chr2:172041600-172042600	Enhancers	Liver	Liver
7	chr2:172041600-172042600	Enhancers	NHDF-Ad	bronchial
8	chr2:172041600-172043000	Bivalent Enhancer	HepG2	liver
9	chr2:172041600-172043000	Enhancers	HSMMtube	muscle
10	chr2:172041800-172042000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:172041800-172042000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:172041800-172042200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr2:172041800-172042200	Enhancers	Osteobl	bone
14	chr2:172041800-172043000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:172041800-172043000	Enhancers	Rectal Smooth Muscle	rectum
16	chr2:172041800-172043200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr2:172041800-172043200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:172041800-172043200	Enhancers	A549	lung
19	chr2:172041800-172043200	Enhancers	NH-A	brain
20	chr2:172041800-172043400	Enhancers	Colon Smooth Muscle	Colon
21	chr2:172041800-172044000	Enhancers	NHLF	lung

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