Variant report

Variant	rs2883940
Chromosome Location	chr2:171853359-171853360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171839960..171842207-chr2:171852236..171854896,2	K562	blood:
2	chr2:171847478..171849629-chr2:171852336..171855019,4	K562	blood:
3	chr2:171847917..171851869-chr2:171851958..171856962,5	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10173931	0.98[EUR][1000 genomes]
rs1035839	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap]
rs10490606	1.00[GIH][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs13017649	1.00[CEU][hapmap]
rs13389859	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs16823191	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs16859087	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16859121	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16859137	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs16859167	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16859176	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16859177	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1863679	0.91[CEU][hapmap];0.92[LWK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap]
rs2059723	0.91[CEU][hapmap]
rs2162574	0.80[CEU][hapmap]
rs2356600	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2356609	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2676143	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap]
rs2676145	1.00[CEU][hapmap]
rs2723245	0.98[EUR][1000 genomes]
rs2723248	0.91[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2723250	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2723253	1.00[CEU][hapmap]
rs4668342	0.80[CEU][hapmap]
rs4668356	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap]
rs55644524	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55885449	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs55939429	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55995602	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55997598	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56004444	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56155163	0.90[EUR][1000 genomes]
rs56155601	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56191582	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56308745	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56382502	0.90[EUR][1000 genomes]
rs56934523	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs57173242	0.85[AFR][1000 genomes]
rs57733560	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs58028937	0.84[AFR][1000 genomes]
rs58307585	0.86[AFR][1000 genomes]
rs58685348	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs59841744	0.90[EUR][1000 genomes]
rs60396936	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60730419	0.83[AFR][1000 genomes]
rs6722196	0.90[EUR][1000 genomes]
rs6736045	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6746133	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6750585	0.88[EUR][1000 genomes]
rs6753513	1.00[CEU][hapmap]
rs73013435	0.90[EUR][1000 genomes]
rs73013436	0.90[EUR][1000 genomes]
rs73013439	0.90[EUR][1000 genomes]
rs73013453	0.90[EUR][1000 genomes]
rs73017249	0.86[AFR][1000 genomes]
rs73027220	0.98[EUR][1000 genomes]
rs73027271	0.90[AFR][1000 genomes]
rs73029214	0.90[EUR][1000 genomes]
rs73976285	0.90[EUR][1000 genomes]
rs7591214	0.90[EUR][1000 genomes]
rs7604392	0.88[AFR][1000 genomes]
rs7608813	1.00[CEU][hapmap]
rs9752051	1.00[CEU][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171830600-171902800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:171830800-171891400	Weak transcription	Spleen	Spleen
3	chr2:171831200-171857400	Weak transcription	HSMMtube	muscle
4	chr2:171831400-171857000	Weak transcription	NHEK	skin
5	chr2:171831400-171879200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:171831400-171916200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:171838600-171862000	Weak transcription	Ovary	ovary
8	chr2:171838800-171861800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:171839200-171854800	Weak transcription	Pancreas	Pancrea
10	chr2:171840800-171861800	Weak transcription	Small Intestine	intestine
11	chr2:171840800-171879200	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:171841000-171862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:171841000-171865400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:171841000-171877800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:171841000-171895800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:171841600-171859000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:171841600-171940000	Weak transcription	Right Ventricle	heart
18	chr2:171842200-171892000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:171842400-171857600	Weak transcription	Fetal Brain Female	brain
20	chr2:171842600-171912000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:171843000-171877400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:171843200-171863200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:171843200-171871800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:171843600-171857000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:171843800-171863400	Strong transcription	Fetal Thymus	thymus
26	chr2:171844600-171853800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr2:171844600-171868800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:171844800-171854200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr2:171844800-171863400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:171844800-171873000	Strong transcription	GM12878-XiMat	blood
31	chr2:171845200-171861000	Weak transcription	Hela-S3	cervix
32	chr2:171845400-171853800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:171845400-171854400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr2:171845400-171858800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr2:171846000-171898000	Weak transcription	Psoas Muscle	Psoas
36	chr2:171846200-171901000	Weak transcription	Fetal Brain Male	brain
37	chr2:171846600-171855400	Strong transcription	Liver	Liver
38	chr2:171847200-171857200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:171847200-171871600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:171847400-171854000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:171847400-171854400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr2:171847400-171855000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:171847400-171864200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr2:171847400-171871600	Strong transcription	Dnd41	blood
45	chr2:171847400-171902600	Weak transcription	Brain Angular Gyrus	brain
46	chr2:171847600-171854000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr2:171847600-171855000	Strong transcription	Fetal Intestine Large	intestine
48	chr2:171847600-171857000	Weak transcription	Fetal Lung	lung
49	chr2:171847600-171871800	Strong transcription	Placenta	Placenta
50	chr2:171847600-171872000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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