Variant report

Variant	rs9752051
Chromosome Location	chr2:172023824-172023825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172021191..172025694-chr2:172290290..172292740,4	K562	blood:
2	chr2:172011123..172013233-chr2:172022939..172025223,2	MCF-7	breast:
3	chr2:172015819..172019220-chr2:172019597..172024479,8	MCF-7	breast:
4	chr2:172018366..172020201-chr2:172023352..172025377,2	MCF-7	breast:
5	chr12:113899861..113900817-chr2:172023608..172024284,2	K562	blood:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction
ENSG00000115827	Chromatin interaction
ENSG00000123600	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs13389859	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16823191	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16859087	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs16859121	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs16859137	0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16859167	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16859176	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16859177	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1863679	0.91[CEU][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2059723	0.91[CEU][hapmap]
rs2356600	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2356609	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2723248	0.91[CEU][hapmap]
rs2723250	1.00[CEU][hapmap]
rs2723253	1.00[CEU][hapmap]
rs2883940	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs55644524	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55885449	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55939429	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55995602	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55997598	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56004444	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56134465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56155163	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56155601	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56267332	0.80[EUR][1000 genomes]
rs56308745	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56382502	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56934523	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57733560	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58028937	0.83[AMR][1000 genomes]
rs58307585	0.86[AMR][1000 genomes]
rs58685348	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59841744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60396936	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60730419	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61105084	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6711423	0.96[EUR][1000 genomes]
rs6736045	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6746133	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73013435	0.84[EUR][1000 genomes]
rs73013436	0.84[EUR][1000 genomes]
rs73013439	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73013453	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73013465	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73017249	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017262	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73017268	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73017286	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73027271	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73029214	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73976125	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73976285	0.84[EUR][1000 genomes]
rs7580756	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7591214	0.84[EUR][1000 genomes]
rs7604392	0.81[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172018000-172027000	Weak transcription	Ovary	ovary
2	chr2:172018200-172029800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:172021400-172025400	Enhancers	Liver	Liver
4	chr2:172022400-172024400	Flanking Active TSS	HepG2	liver
5	chr2:172022600-172024000	Enhancers	Fetal Heart	heart
6	chr2:172022600-172024200	Enhancers	Placenta	Placenta
7	chr2:172023000-172029800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:172023600-172024200	Enhancers	Fetal Lung	lung
9	chr2:172023800-172024000	Enhancers	Gastric	stomach

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