Variant report

Variant	rs60730419
Chromosome Location	chr2:172025173-172025174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172021191..172025694-chr2:172290290..172292740,4	K562	blood:
2	chr2:172011123..172013233-chr2:172022939..172025223,2	MCF-7	breast:
3	chr2:172018366..172020201-chr2:172023352..172025377,2	MCF-7	breast:
4	chr2:172025125..172028095-chr2:172031159..172032971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115827	Chromatin interaction
ENSG00000123600	Chromatin interaction
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13389859	0.84[EUR][1000 genomes]
rs16823191	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16859087	0.82[AFR][1000 genomes]
rs16859121	0.84[AFR][1000 genomes]
rs16859137	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16859167	0.84[EUR][1000 genomes]
rs16859176	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16859177	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1863679	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2356600	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2356609	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2883940	0.83[AFR][1000 genomes]
rs55644524	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55885449	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55939429	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55995602	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55997598	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56004444	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56134465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56155163	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56155601	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56191582	0.82[AFR][1000 genomes]
rs56267332	0.80[EUR][1000 genomes]
rs56308745	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56382502	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56934523	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57733560	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58028937	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58307585	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58685348	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59841744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60396936	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61105084	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6711423	0.96[EUR][1000 genomes]
rs6736045	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6746133	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73013435	0.84[EUR][1000 genomes]
rs73013436	0.84[EUR][1000 genomes]
rs73013439	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73013453	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73013465	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73017249	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017262	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73017268	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73017286	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73027271	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73029214	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73976125	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73976285	0.84[EUR][1000 genomes]
rs7580756	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7591214	0.84[EUR][1000 genomes]
rs7604392	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9752051	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172018000-172027000	Weak transcription	Ovary	ovary
2	chr2:172018200-172029800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:172021400-172025400	Enhancers	Liver	Liver
4	chr2:172023000-172029800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:172024400-172028400	Enhancers	HepG2	liver
6	chr2:172024600-172025400	Enhancers	Placenta	Placenta

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