Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171772485..171776882-chr2:171782682..171785818,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115806	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1035839	0.80[CEU][hapmap]
rs12465006	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13017649	0.80[CEU][hapmap]
rs13389859	0.80[CEU][hapmap]
rs16859087	0.80[CEU][hapmap]
rs16859121	0.80[CEU][hapmap]
rs2356600	0.82[CEU][hapmap]
rs2557791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2676137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2676143	0.80[CEU][hapmap]
rs2676145	0.80[CEU][hapmap]
rs2723250	0.82[CEU][hapmap]
rs2723253	0.80[CEU][hapmap]
rs2883940	0.80[CEU][hapmap]
rs4668342	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668356	0.80[CEU][hapmap]
rs6433265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736045	0.82[CEU][hapmap]
rs6753513	0.81[CEU][hapmap]
rs7608813	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171773400-171774200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:171773400-171774800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:171773600-171774200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
4	chr2:171773600-171775400	ZNF genes & repeats	Liver	Liver
5	chr2:171773600-171776000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr2:171773800-171774200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:171773800-171774400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr2:171773800-171774600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:171773800-171775000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
10	chr2:171774000-171774200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:171774000-171774200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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