Variant report

Variant	rs2676145
Chromosome Location	chr2:171790387-171790388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171788393..171792186-chr2:171793028..171799958,7	MCF-7	breast:
2	chr2:171789845..171791695-chr2:171813662..171815924,2	K562	blood:
3	chr2:171789901..171791670-chr2:171818002..171819577,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1035839	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs13017649	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13028361	0.91[EUR][1000 genomes]
rs13389859	1.00[CEU][hapmap]
rs16859087	1.00[CEU][hapmap]
rs16859121	1.00[CEU][hapmap]
rs16859167	1.00[CEU][hapmap]
rs2059723	0.91[CEU][hapmap];0.93[TSI][hapmap]
rs2162574	0.80[CEU][hapmap]
rs2356600	1.00[CEU][hapmap]
rs2356609	1.00[CEU][hapmap]
rs2676139	0.98[EUR][1000 genomes]
rs2676143	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2676158	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2723248	0.91[CEU][hapmap]
rs2723250	1.00[CEU][hapmap]
rs2723253	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2883940	1.00[CEU][hapmap]
rs4668342	0.80[CEU][hapmap];0.85[TSI][hapmap]
rs4668353	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4668356	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6711510	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6736045	1.00[CEU][hapmap]
rs6743095	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6746413	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6753513	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7608813	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs966181	0.98[EUR][1000 genomes]
rs999837	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171787000-171793800	Weak transcription	Gastric	stomach
2	chr2:171787000-171810400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:171787200-171790800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:171787200-171791000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:171787200-171791400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:171787200-171793200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:171787200-171793800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:171787200-171795200	Weak transcription	Ovary	ovary
9	chr2:171787400-171790600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:171787400-171790800	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:171787400-171790800	Weak transcription	Pancreas	Pancrea
12	chr2:171787400-171791000	Weak transcription	Lung	lung
13	chr2:171787400-171791200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:171787400-171791400	Weak transcription	Thymus	Thymus
15	chr2:171787400-171792200	Weak transcription	Fetal Thymus	thymus
16	chr2:171787400-171792800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:171787400-171792800	Weak transcription	Spleen	Spleen
18	chr2:171787400-171793000	Weak transcription	Placenta	Placenta
19	chr2:171787400-171806000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr2:171787400-171806000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:171787400-171806000	Weak transcription	Esophagus	oesophagus
22	chr2:171787400-171806000	Weak transcription	Psoas Muscle	Psoas
23	chr2:171787400-171807200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:171787400-171808200	Weak transcription	Aorta	Aorta
25	chr2:171787400-171810000	Weak transcription	Small Intestine	intestine
26	chr2:171787600-171790600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr2:171787600-171790600	Enhancers	Liver	Liver
28	chr2:171787600-171791000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:171787600-171791000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:171787600-171793200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr2:171787600-171793800	Weak transcription	Right Ventricle	heart
32	chr2:171787600-171796600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr2:171787600-171806800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr2:171787600-171807600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:171787600-171829800	Weak transcription	Right Atrium	heart
36	chr2:171787800-171792000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr2:171787800-171795000	Weak transcription	Adipose Nuclei	Adipose
38	chr2:171787800-171795800	Weak transcription	Primary B cells from cord blood	blood
39	chr2:171787800-171798800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:171787800-171806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:171787800-171806000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:171787800-171806200	Weak transcription	Fetal Kidney	kidney
43	chr2:171787800-171806600	Weak transcription	Fetal Brain Female	brain
44	chr2:171787800-171807000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr2:171787800-171807400	Weak transcription	Brain Germinal Matrix	brain
46	chr2:171787800-171809200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:171788000-171791000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:171788000-171792200	Weak transcription	NHLF	lung
49	chr2:171788000-171793000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr2:171788000-171793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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