Variant report

Variant	rs17608242
Chromosome Location	chr2:171748365-171748366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10930447	0.90[EUR][1000 genomes]
rs11899713	0.90[EUR][1000 genomes]
rs11904750	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12467411	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12468326	0.90[EUR][1000 genomes]
rs16859026	0.90[EUR][1000 genomes]
rs16859028	0.90[EUR][1000 genomes]
rs16859076	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17505447	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2081767	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2081768	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2356422	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3731993	1.00[CEU][hapmap]
rs3770436	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs3770439	1.00[CEU][hapmap]
rs3886463	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171743000-171751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:171743000-171751400	Weak transcription	HSMMtube	muscle
3	chr2:171743200-171748600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:171747000-171748600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:171747800-171749200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:171748000-171748400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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