Variant report

Variant	rs10931426
Chromosome Location	chr2:190458859-190458860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190446940..190449110-chr2:190456662..190458990,2	MCF-7	breast:
2	chr2:190457442..190459082-chr2:190460282..190462125,2	MCF-7	breast:
3	chr2:190457726..190459959-chr2:190464125..190466028,2	K562	blood:
4	chr2:190444872..190450921-chr2:190457183..190461226,6	K562	blood:
5	chr2:190444872..190449774-chr2:190457341..190461226,6	K562	blood:
6	chr2:190451312..190454709-chr2:190455474..190459136,4	K562	blood:
7	chr2:190455815..190461971-chr2:190463661..190467798,11	K562	blood:
8	chr2:190452817..190455455-chr2:190456994..190459136,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10188680	0.89[YRI][hapmap]
rs11683621	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901113	0.90[EUR][1000 genomes]
rs1439816	0.94[CEU][hapmap]
rs2352267	0.85[LWK][hapmap];0.89[YRI][hapmap]
rs6718798	0.85[LWK][hapmap];0.93[YRI][hapmap]
rs6727543	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7563737	1.00[ASW][hapmap];0.94[CEU][hapmap];0.95[GIH][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7590106	0.89[YRI][hapmap]
rs7592158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190455000-190461400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:190456000-190461000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:190456200-190459800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:190458400-190462600	Weak transcription	Aorta	Aorta
5	chr2:190458600-190460200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr2:190458800-190460200	Weak transcription	Primary T cells from cord blood	blood
7	chr2:190458800-190460400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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