Variant report

Variant	rs6718798
Chromosome Location	chr2:190452586-190452587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10177654	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10188680	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10931426	0.85[LWK][hapmap];0.93[YRI][hapmap]
rs11694919	0.95[EUR][1000 genomes]
rs12465298	0.95[EUR][1000 genomes]
rs12619013	0.94[EUR][1000 genomes]
rs13012833	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1347708	0.96[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1370593	0.95[EUR][1000 genomes]
rs1437885	0.96[EUR][1000 genomes]
rs17198983	0.96[CEU][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2352267	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2352270	0.96[EUR][1000 genomes]
rs4666778	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6712505	0.95[EUR][1000 genomes]
rs6718734	0.95[EUR][1000 genomes]
rs6733858	0.94[EUR][1000 genomes]
rs6741965	0.92[EUR][1000 genomes]
rs7590106	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190448400-190457400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:190450600-190452600	Weak transcription	Stomach Mucosa	stomach
3	chr2:190450600-190455200	Weak transcription	K562	blood
4	chr2:190452200-190452600	Enhancers	Primary T cells from cord blood	blood
5	chr2:190452400-190452800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:190452400-190452800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:190452400-190452800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:190452400-190453400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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