Variant report

Variant	rs6741965
Chromosome Location	chr2:190466796-190466797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10177654	0.92[EUR][1000 genomes]
rs10188680	0.92[EUR][1000 genomes]
rs11694919	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12465298	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12619013	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13012833	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1347708	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1370593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1437885	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17198983	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2352267	0.89[EUR][1000 genomes]
rs2352270	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6712505	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6718734	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6718798	0.92[EUR][1000 genomes]
rs6733858	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7590106	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190464400-190467000	Weak transcription	K562	blood
2	chr2:190464800-190467000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:190464800-190470800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:190465800-190467000	Weak transcription	Placenta	Placenta
5	chr2:190465800-190469600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links