Variant report
Variant | rs6718734 |
---|---|
Chromosome Location | chr2:190461543-190461544 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:190443548..190446243-chr2:190461112..190462981,2 | MCF-7 | breast: | |
2 | chr2:190455804..190458326-chr2:190460988..190463187,2 | K562 | blood: | |
3 | chr2:190457442..190459082-chr2:190460282..190462125,2 | MCF-7 | breast: | |
4 | chr2:190455815..190461971-chr2:190463661..190467798,11 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000138449 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10177654 | 0.95[EUR][1000 genomes] |
rs10188680 | 0.95[EUR][1000 genomes] |
rs11694919 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12465298 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12619013 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12986707 | 0.81[AFR][1000 genomes] |
rs13012833 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1347708 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1370593 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1437885 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17198983 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2352267 | 0.91[EUR][1000 genomes] |
rs2352270 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4666778 | 0.82[EUR][1000 genomes] |
rs6712505 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6718798 | 0.95[EUR][1000 genomes] |
rs6733858 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6741965 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7590106 | 0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533029 | chr2:189812229-190554339 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:190458400-190462600 | Weak transcription | Aorta | Aorta |