Variant report

Variant	rs2352270
Chromosome Location	chr2:190456396-190456397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10177654	0.96[EUR][1000 genomes]
rs10188680	0.96[EUR][1000 genomes]
rs11694919	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12465298	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619013	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13012833	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347708	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1370593	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437885	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17198983	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2352267	0.93[EUR][1000 genomes]
rs4666778	0.83[EUR][1000 genomes]
rs6712505	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6718734	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718798	0.96[EUR][1000 genomes]
rs6733858	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741965	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7590106	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190448400-190457400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:190453200-190456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:190453400-190456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:190455000-190461400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:190455400-190456400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr2:190456000-190458600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:190456000-190461000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:190456200-190456600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:190456200-190457000	Enhancers	Primary T cells from cord blood	blood
10	chr2:190456200-190458800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr2:190456200-190459800	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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