Variant report

Variant	rs10934212
Chromosome Location	chr3:112742428-112742429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1054263	0.89[EUR][1000 genomes]
rs16860319	0.89[EUR][1000 genomes]
rs17236528	0.89[EUR][1000 genomes]
rs4082660	0.85[EUR][1000 genomes]
rs55637984	0.82[EUR][1000 genomes]
rs55880301	0.82[EUR][1000 genomes]
rs56139709	0.87[AMR][1000 genomes]
rs6764110	0.89[EUR][1000 genomes]
rs7628368	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112739200-112744000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:112739600-112743000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:112739800-112743600	Weak transcription	Fetal Thymus	thymus
4	chr3:112740000-112742600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:112740000-112743400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:112740000-112743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:112740800-112770200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:112742400-112742600	Enhancers	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links