Variant report

Variant	rs55637984
Chromosome Location	chr3:112687759-112687760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1054263	0.92[EUR][1000 genomes]
rs10934212	0.82[EUR][1000 genomes]
rs11914890	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16860279	0.97[AFR][1000 genomes]
rs16860319	0.92[EUR][1000 genomes]
rs4082660	0.96[EUR][1000 genomes]
rs55880301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55892503	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6764110	0.92[EUR][1000 genomes]
rs7628368	0.92[EUR][1000 genomes]
rs7652466	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112683000-112691400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:112684200-112688800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:112684200-112693000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:112684600-112688400	Enhancers	Primary B cells from cord blood	blood
5	chr3:112684800-112687800	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:112684800-112687800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:112684800-112688000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:112685000-112689000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:112685000-112690600	Enhancers	Primary T cells from cord blood	blood
10	chr3:112685200-112688400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:112685600-112690200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:112685600-112690400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:112685600-112691000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:112685600-112691400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:112685800-112691200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:112686000-112688000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:112686000-112689400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:112686000-112690800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:112686200-112688200	Flanking Active TSS	GM12878-XiMat	blood
20	chr3:112686200-112691400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:112687000-112688400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:112687400-112687800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:112687400-112688200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:112687400-112691600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:112687600-112687800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:112687600-112688000	Weak transcription	Spleen	Spleen
27	chr3:112687600-112689400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:112687600-112692600	Weak transcription	Primary hematopoietic stem cells	blood

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