Variant report

Variant	rs55880301
Chromosome Location	chr3:112682354-112682355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1054263	0.92[EUR][1000 genomes]
rs10934212	0.82[EUR][1000 genomes]
rs11914890	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16860279	0.97[AFR][1000 genomes]
rs16860319	0.92[EUR][1000 genomes]
rs4082660	0.96[EUR][1000 genomes]
rs55637984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55892503	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6764110	0.92[EUR][1000 genomes]
rs7628368	0.92[EUR][1000 genomes]
rs7652466	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112675800-112682600	Weak transcription	Spleen	Spleen
2	chr3:112675800-112682800	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:112679200-112682600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:112679600-112682600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:112681600-112683000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr3:112681800-112683000	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr3:112681800-112683000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr3:112682000-112683000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
10	chr3:112682000-112683000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr3:112682200-112683000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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