Variant report

Variant	rs10941672
Chromosome Location	chr5:44601807-44601808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10054457	0.93[ASN][1000 genomes]
rs10054541	0.98[ASN][1000 genomes]
rs10054677	0.98[ASN][1000 genomes]
rs10061166	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10062760	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062844	0.89[ASN][1000 genomes]
rs10064677	0.98[ASN][1000 genomes]
rs10064870	0.93[ASN][1000 genomes]
rs10069750	0.93[ASN][1000 genomes]
rs10069792	0.93[ASN][1000 genomes]
rs10155570	0.98[ASN][1000 genomes]
rs10512854	1.00[JPT][hapmap]
rs10941669	0.98[ASN][1000 genomes]
rs10941670	0.98[ASN][1000 genomes]
rs10941671	0.98[ASN][1000 genomes]
rs10941673	0.96[EUR][1000 genomes]
rs10941674	0.98[ASN][1000 genomes]
rs10941675	0.93[ASN][1000 genomes]
rs1116180	0.84[EUR][1000 genomes]
rs12186589	0.94[EUR][1000 genomes]
rs12188017	0.82[EUR][1000 genomes]
rs12188390	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13153459	0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs13154743	0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs13160582	1.00[JPT][hapmap]
rs13190202	0.98[ASN][1000 genomes]
rs13355269	0.97[EUR][1000 genomes]
rs13358061	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1482695	0.92[EUR][1000 genomes]
rs1531803	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552184	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16901868	0.82[EUR][1000 genomes]
rs17319592	0.81[EUR][1000 genomes]
rs1871950	0.82[EUR][1000 genomes]
rs2128431	0.82[EUR][1000 genomes]
rs2330570	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28438634	0.93[ASN][1000 genomes]
rs28483338	0.93[ASN][1000 genomes]
rs28488464	0.93[ASN][1000 genomes]
rs28561538	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34031096	0.87[ASN][1000 genomes]
rs34577718	0.93[ASN][1000 genomes]
rs34810763	0.93[ASN][1000 genomes]
rs35729012	0.93[ASN][1000 genomes]
rs4594862	0.91[ASN][1000 genomes]
rs4627994	0.91[ASN][1000 genomes]
rs4642379	0.93[ASN][1000 genomes]
rs4643966	0.93[ASN][1000 genomes]
rs55636639	0.93[ASN][1000 genomes]
rs55899909	0.93[ASN][1000 genomes]
rs56101501	0.93[ASN][1000 genomes]
rs56313556	0.83[EUR][1000 genomes]
rs57777873	0.82[EUR][1000 genomes]
rs58261355	0.82[EUR][1000 genomes]
rs58826391	0.82[EUR][1000 genomes]
rs60055069	0.89[ASN][1000 genomes]
rs60912459	0.82[EUR][1000 genomes]
rs61399521	0.82[EUR][1000 genomes]
rs6451764	0.92[EUR][1000 genomes]
rs6869262	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870835	1.00[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6883915	1.00[JPT][hapmap]
rs6884170	0.84[EUR][1000 genomes]
rs72748041	0.83[EUR][1000 genomes]
rs72748047	0.83[EUR][1000 genomes]
rs72748048	0.83[EUR][1000 genomes]
rs72748056	0.82[EUR][1000 genomes]
rs72748063	0.81[EUR][1000 genomes]
rs72748065	0.82[EUR][1000 genomes]
rs72748076	0.83[EUR][1000 genomes]
rs72748082	0.82[EUR][1000 genomes]
rs72748092	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72750279	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73752037	0.83[EUR][1000 genomes]
rs7706806	1.00[JPT][hapmap]
rs7722103	0.96[ASN][1000 genomes]
rs7722716	0.98[ASN][1000 genomes]
rs7733376	0.83[EUR][1000 genomes]
rs922853	0.83[EUR][1000 genomes]
rs922854	0.83[EUR][1000 genomes]
rs922855	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes]
rs9292910	0.93[ASN][1000 genomes]
rs957739	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10941672	LOC647121	Cis_chr	lymphoblastoid	RTeQTL
rs10941672	MRPS30	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44597800-44603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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