Variant report

Variant	rs12188390
Chromosome Location	chr5:44567145-44567146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10054457	0.98[ASN][1000 genomes]
rs10054541	0.93[ASN][1000 genomes]
rs10054677	0.93[ASN][1000 genomes]
rs10061166	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10062760	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10062844	0.85[ASN][1000 genomes]
rs10064677	0.93[ASN][1000 genomes]
rs10064870	0.89[ASN][1000 genomes]
rs10069750	0.98[ASN][1000 genomes]
rs10069792	0.98[ASN][1000 genomes]
rs10155570	0.93[ASN][1000 genomes]
rs10512854	1.00[JPT][hapmap]
rs10941669	0.93[ASN][1000 genomes]
rs10941670	0.93[ASN][1000 genomes]
rs10941671	0.93[ASN][1000 genomes]
rs10941672	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941673	0.94[EUR][1000 genomes]
rs10941674	0.93[ASN][1000 genomes]
rs10941675	0.89[ASN][1000 genomes]
rs1116180	0.86[EUR][1000 genomes]
rs12186589	0.96[EUR][1000 genomes]
rs12188017	0.83[EUR][1000 genomes]
rs13153459	1.00[JPT][hapmap]
rs13154743	1.00[JPT][hapmap]
rs13160582	1.00[JPT][hapmap]
rs13190202	0.93[ASN][1000 genomes]
rs13355269	0.95[EUR][1000 genomes]
rs13358061	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482695	0.93[EUR][1000 genomes]
rs1531803	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1552184	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16901868	0.83[EUR][1000 genomes]
rs17319592	0.82[EUR][1000 genomes]
rs1871950	0.84[EUR][1000 genomes]
rs2128431	0.83[EUR][1000 genomes]
rs2330570	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28438634	0.98[ASN][1000 genomes]
rs28483338	0.98[ASN][1000 genomes]
rs28488464	0.98[ASN][1000 genomes]
rs28561538	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34031096	0.91[ASN][1000 genomes]
rs34577718	0.98[ASN][1000 genomes]
rs34810763	0.89[ASN][1000 genomes]
rs35729012	0.89[ASN][1000 genomes]
rs4594862	0.96[ASN][1000 genomes]
rs4627994	0.96[ASN][1000 genomes]
rs4642379	0.98[ASN][1000 genomes]
rs4643966	0.98[ASN][1000 genomes]
rs55636639	0.89[ASN][1000 genomes]
rs55899909	0.89[ASN][1000 genomes]
rs56101501	0.89[ASN][1000 genomes]
rs56313556	0.85[EUR][1000 genomes]
rs57777873	0.83[EUR][1000 genomes]
rs58261355	0.83[EUR][1000 genomes]
rs58826391	0.84[EUR][1000 genomes]
rs60055069	0.84[ASN][1000 genomes]
rs60912459	0.83[EUR][1000 genomes]
rs61399521	0.84[EUR][1000 genomes]
rs6451764	0.94[EUR][1000 genomes]
rs6869262	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6870835	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6883915	1.00[JPT][hapmap]
rs6884170	0.86[EUR][1000 genomes]
rs72748041	0.85[EUR][1000 genomes]
rs72748047	0.85[EUR][1000 genomes]
rs72748048	0.85[EUR][1000 genomes]
rs72748056	0.83[EUR][1000 genomes]
rs72748063	0.82[EUR][1000 genomes]
rs72748065	0.83[EUR][1000 genomes]
rs72748076	0.85[EUR][1000 genomes]
rs72748082	0.84[EUR][1000 genomes]
rs72748092	0.93[EUR][1000 genomes]
rs72750279	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73752037	0.85[EUR][1000 genomes]
rs7706806	1.00[JPT][hapmap]
rs7722103	0.91[ASN][1000 genomes]
rs7722716	0.93[ASN][1000 genomes]
rs7733376	0.85[EUR][1000 genomes]
rs922853	0.85[EUR][1000 genomes]
rs922854	0.85[EUR][1000 genomes]
rs922855	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9292910	0.89[ASN][1000 genomes]
rs957739	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12188390	LOC647121	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44566200-44567400	Enhancers	Hela-S3	cervix
2	chr5:44566600-44567200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links