Variant report

Variant	rs35729012
Chromosome Location	chr7:58022291-58022292
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10054457	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10054677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055724	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10062760	0.93[ASN][1000 genomes]
rs10062844	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10064677	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064870	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10069750	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10069792	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155570	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512854	0.83[EUR][1000 genomes]
rs10941669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941672	0.93[ASN][1000 genomes]
rs10941674	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941675	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12108957	0.83[EUR][1000 genomes]
rs12109250	0.85[EUR][1000 genomes]
rs12187906	0.93[EUR][1000 genomes]
rs12188390	0.89[ASN][1000 genomes]
rs12189214	0.81[EUR][1000 genomes]
rs13153459	0.85[EUR][1000 genomes]
rs13154743	0.87[EUR][1000 genomes]
rs13160582	0.83[EUR][1000 genomes]
rs13162578	0.82[EUR][1000 genomes]
rs13169165	0.93[EUR][1000 genomes]
rs13170860	0.93[EUR][1000 genomes]
rs13173094	0.90[EUR][1000 genomes]
rs13179281	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13190202	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13190489	0.93[EUR][1000 genomes]
rs13358061	0.89[ASN][1000 genomes]
rs1482664	0.93[EUR][1000 genomes]
rs16901870	0.81[EUR][1000 genomes]
rs16901875	0.82[EUR][1000 genomes]
rs16901883	0.83[EUR][1000 genomes]
rs28438634	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28483338	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28488464	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34031096	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34119371	0.81[EUR][1000 genomes]
rs34391578	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34577718	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34810763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35420014	0.90[EUR][1000 genomes]
rs35656601	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3898543	0.83[EUR][1000 genomes]
rs4594862	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4627994	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4642379	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4643966	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55636639	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56101501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56340528	0.84[EUR][1000 genomes]
rs56724254	0.87[EUR][1000 genomes]
rs57060529	0.93[EUR][1000 genomes]
rs57068965	0.82[EUR][1000 genomes]
rs58035824	0.81[EUR][1000 genomes]
rs59836876	0.83[EUR][1000 genomes]
rs60055069	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67485736	0.93[EUR][1000 genomes]
rs67667620	0.87[EUR][1000 genomes]
rs6862324	0.92[EUR][1000 genomes]
rs6865011	0.82[EUR][1000 genomes]
rs6865230	0.82[EUR][1000 genomes]
rs6865330	0.82[EUR][1000 genomes]
rs6866555	0.93[EUR][1000 genomes]
rs6869262	0.93[ASN][1000 genomes]
rs6883915	0.83[EUR][1000 genomes]
rs72748075	0.82[EUR][1000 genomes]
rs7706806	0.85[EUR][1000 genomes]
rs7713453	0.83[EUR][1000 genomes]
rs7722103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7722716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727980	0.92[EUR][1000 genomes]
rs7730866	0.82[EUR][1000 genomes]
rs873475	0.92[EUR][1000 genomes]
rs9292910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960060	0.83[EUR][1000 genomes]
rs9765008	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv433384	chr7:57633285-58029051	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv607105	chr7:57923927-58051868	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv607106	chr7:57923927-58054092	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv13519	chr7:57940278-58054218	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv821066	chr7:57940278-58054218	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607107	chr7:57940293-58051868	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv607108	chr7:57940293-58054092	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv607112	chr7:57992609-58051868	Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3440004	chr7:58019010-58023608	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35729012	LOC647121	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58021800-58026400	Weak transcription	Liver	Liver

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