Variant report

Variant	rs10943790
Chromosome Location	chr5:74430213-74430214
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10485394	0.80[EUR][1000 genomes]
rs10943782	0.90[ASN][1000 genomes]
rs10943784	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943785	0.90[ASN][1000 genomes]
rs10943791	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10943793	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157977	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751373	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11756196	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759431	0.82[EUR][1000 genomes]
rs12195031	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196637	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199021	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199170	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199207	0.87[ASN][1000 genomes]
rs12206819	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12207225	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210229	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12212221	0.90[ASN][1000 genomes]
rs1343234	0.82[EUR][1000 genomes]
rs1473796	0.85[EUR][1000 genomes]
rs16892884	0.87[EUR][1000 genomes]
rs16892898	0.82[EUR][1000 genomes]
rs16892955	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892966	0.84[EUR][1000 genomes]
rs16892967	0.84[EUR][1000 genomes]
rs16892974	0.84[EUR][1000 genomes]
rs16892985	0.85[EUR][1000 genomes]
rs1831996	0.82[EUR][1000 genomes]
rs2180772	0.84[EUR][1000 genomes]
rs2323156	0.84[EUR][1000 genomes]
rs2323157	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2323159	0.86[EUR][1000 genomes]
rs35443726	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458739	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56125915	0.90[ASN][1000 genomes]
rs56202615	0.86[EUR][1000 genomes]
rs56294498	0.84[EUR][1000 genomes]
rs59630332	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59634384	0.86[EUR][1000 genomes]
rs62425688	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62425752	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426807	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427884	0.90[ASN][1000 genomes]
rs6454208	0.82[EUR][1000 genomes]
rs6454209	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6454210	0.82[EUR][1000 genomes]
rs6454211	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6909645	0.87[EUR][1000 genomes]
rs6911387	0.82[EUR][1000 genomes]
rs6926206	0.85[EUR][1000 genomes]
rs6941540	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7741536	0.85[EUR][1000 genomes]
rs7741560	0.85[EUR][1000 genomes]
rs7741890	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341866	0.82[EUR][1000 genomes]
rs9341868	0.84[EUR][1000 genomes]
rs9341873	0.86[EUR][1000 genomes]
rs9344143	0.85[EUR][1000 genomes]
rs9344144	0.86[EUR][1000 genomes]
rs9344145	0.86[EUR][1000 genomes]
rs9350923	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9352973	0.82[EUR][1000 genomes]
rs9361774	0.82[EUR][1000 genomes]
rs9361776	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9361777	0.81[EUR][1000 genomes]
rs9361787	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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