Variant report

Variant	rs12195031
Chromosome Location	chr6:81950610-81950611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10943782	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943783	0.82[AFR][1000 genomes]
rs10943784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943785	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943790	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943791	0.89[ASN][1000 genomes]
rs10943793	0.90[ASN][1000 genomes]
rs1157977	0.90[ASN][1000 genomes]
rs11756196	0.89[ASN][1000 genomes]
rs11759431	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12199021	0.90[ASN][1000 genomes]
rs12199170	0.90[ASN][1000 genomes]
rs12199207	0.97[ASN][1000 genomes]
rs12206819	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207225	0.90[ASN][1000 genomes]
rs12212221	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473796	0.82[EUR][1000 genomes]
rs16892884	0.91[EUR][1000 genomes]
rs16892898	0.86[EUR][1000 genomes]
rs16892955	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16892966	0.81[EUR][1000 genomes]
rs16892967	0.81[EUR][1000 genomes]
rs16892974	0.82[EUR][1000 genomes]
rs16892985	0.82[EUR][1000 genomes]
rs1831996	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2180772	0.84[EUR][1000 genomes]
rs2323156	0.83[EUR][1000 genomes]
rs2323157	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2323159	0.83[EUR][1000 genomes]
rs35443726	0.90[ASN][1000 genomes]
rs4458739	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56125915	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56202615	0.90[EUR][1000 genomes]
rs56294498	0.83[EUR][1000 genomes]
rs59630332	0.90[ASN][1000 genomes]
rs59634384	0.83[EUR][1000 genomes]
rs62425688	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62425752	0.90[ASN][1000 genomes]
rs62426807	0.90[ASN][1000 genomes]
rs62427884	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454208	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6454209	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6454210	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6454211	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6909645	0.91[EUR][1000 genomes]
rs6911387	0.86[EUR][1000 genomes]
rs6926206	0.82[EUR][1000 genomes]
rs6941540	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741536	0.82[EUR][1000 genomes]
rs7741560	0.82[EUR][1000 genomes]
rs7741890	0.90[ASN][1000 genomes]
rs9341866	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9341868	0.84[EUR][1000 genomes]
rs9341873	0.83[EUR][1000 genomes]
rs9344143	0.82[EUR][1000 genomes]
rs9344144	0.83[EUR][1000 genomes]
rs9344145	0.83[EUR][1000 genomes]
rs9350923	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9352973	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9361774	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9361776	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9361777	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9361787	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv5372	chr6:81912685-81957712	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81950400-81953000	Enhancers	NHDF-Ad	bronchial
2	chr6:81950600-81952800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:81950600-81953000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:81950600-81953000	Enhancers	Osteobl	bone

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