Variant report

Variant	rs10943791
Chromosome Location	chr5:170299039-170299040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:170289238..170291484-chr5:170298670..170300179,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204764	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485394	0.96[EUR][1000 genomes]
rs10943782	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10943784	0.89[ASN][1000 genomes]
rs10943785	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10943790	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10943793	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1157977	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11751373	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756196	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12195031	0.89[ASN][1000 genomes]
rs12196637	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12199021	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199170	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199207	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206819	0.89[ASN][1000 genomes]
rs12207225	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12210229	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12212221	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16892955	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35443726	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56125915	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59630332	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425752	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62426807	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62427884	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941540	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7741890	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9344148	0.81[AMR][1000 genomes]
rs9352983	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817252	chr5:169653626-170455735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv600262	chr5:170088491-170769852	Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv520782	chr5:170243433-170600883	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:170289800-170303000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:170290400-170303000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:170290400-170312400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:170296600-170303000	Weak transcription	Gastric	stomach
5	chr5:170297600-170316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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