Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1015916	0.83[EUR][1000 genomes]
rs10943791	0.81[AMR][1000 genomes]
rs11755408	0.85[EUR][1000 genomes]
rs11759964	0.85[EUR][1000 genomes]
rs12196166	0.83[EUR][1000 genomes]
rs12199697	0.83[EUR][1000 genomes]
rs12199755	0.85[EUR][1000 genomes]
rs12202413	0.82[EUR][1000 genomes]
rs12215976	0.83[EUR][1000 genomes]
rs12216032	0.84[EUR][1000 genomes]
rs12216079	0.83[EUR][1000 genomes]
rs12216088	0.83[EUR][1000 genomes]
rs12216146	0.85[EUR][1000 genomes]
rs13197280	0.83[EUR][1000 genomes]
rs13211565	0.84[EUR][1000 genomes]
rs13219498	0.85[EUR][1000 genomes]
rs1419024	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2083941	0.85[EUR][1000 genomes]
rs2096259	0.85[EUR][1000 genomes]
rs34044367	0.82[EUR][1000 genomes]
rs34306074	0.84[EUR][1000 genomes]
rs34804812	0.83[EUR][1000 genomes]
rs35070876	0.85[EUR][1000 genomes]
rs35210963	0.84[EUR][1000 genomes]
rs35282866	0.82[EUR][1000 genomes]
rs35374282	0.84[EUR][1000 genomes]
rs35785621	0.85[EUR][1000 genomes]
rs36031576	0.82[EUR][1000 genomes]
rs62427768	0.86[EUR][1000 genomes]
rs62427789	0.81[EUR][1000 genomes]
rs62427790	0.82[EUR][1000 genomes]
rs71558972	0.83[EUR][1000 genomes]
rs9344152	0.85[EUR][1000 genomes]
rs9344158	0.85[EUR][1000 genomes]
rs9352983	0.83[EUR][1000 genomes]
rs9352988	0.89[EUR][1000 genomes]
rs9352989	0.89[EUR][1000 genomes]
rs9352993	0.81[EUR][1000 genomes]
rs9352995	0.83[EUR][1000 genomes]
rs9352998	0.83[EUR][1000 genomes]
rs9361792	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034440	chr6:82002417-82044834	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9344148	IBTK	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82018200-82019600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:82018400-82019200	Flanking Active TSS	Liver	Liver
3	chr6:82018400-82019400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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